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40 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing				Joseph R Ecker
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE10968	Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Arabidopsis thaliana	22	CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008
GSE43858	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (RNA-Seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	144	TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE41753	Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Glycine max	97	TSV TXT SRA Run Selector	Joseph R Ecker	Jun 04, 2013
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE43463	Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants (RNA-seq)	Expression profiling by high throughput sequencing	Glycine max	24	TXT SRA Run Selector	Joseph R Ecker	Jan 08, 2014
GSE79709	Unique cell-type specific patterns of DNA methylation in the root meristem (RNA-seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6	TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	15	TSV	Joseph R Ecker	Mar 31, 2016
GSE80744	Epigenomic and genome structural diversity in a worldwide collection of Arabidopsis thaliana	Expression profiling by high throughput sequencing	Arabidopsis thaliana	728	TSV TXT SRA Run Selector	Joseph R Ecker	Jul 14, 2016
GSE83765	RNA-seq of naive and primed ES cells	Expression profiling by high throughput sequencing	Homo sapiens	14	PILEUP TXT SRA Run Selector	Joseph R Ecker	Jul 15, 2016
GSE75868	Molecular Criteria for Defining the Naive Human Pluripotent State	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	PILEUP TSV TXT	Joseph R Ecker	Jul 18, 2016
GSE85689	RNA-seq of naive and primed ES cells (NHSM)	Expression profiling by high throughput sequencing	Homo sapiens	6	PILEUP TXT SRA Run Selector	Joseph R Ecker	Aug 16, 2016
GSE50191	Maize proteome and transcriptome atlas	Expression profiling by high throughput sequencing	Zea mays	68	TSV SRA Run Selector	Joseph R Ecker	Aug 18, 2016
GSE79309	Functional Haploid Human Oocytes Generated from Polar Body Genomes (RNA-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	6	TXT SRA Run Selector	Joseph R Ecker	Dec 07, 2016
GSE79310	Functional Haploid Human Oocytes Generated from Polar Body Genomes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	TSV TXT	Joseph R Ecker	Dec 07, 2016
GSE82022	Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	18	TAR TSV SRA Run Selector	Joseph R Ecker	Dec 20, 2016
GSE80565	RNA-seq of abscisic acid-reponsive transcription factors	Expression profiling by high throughput sequencing	Arabidopsis thaliana	28	TXT SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE80567	RNA-seq of abscisic acid-reponsive transcription factors [DIG]	Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE80568	ChIP-Seq and RNA-Seq of abscisic acid-reponsive transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	165	BED	Joseph R Ecker	Feb 03, 2017