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3416 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BED
GSE196450	Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors	Expression profiling by high throughput sequencing Other	Homo sapiens	126	BED BW HIC TXT	Ryuichiro Nakato	Jul 28, 2023
GSE160087	Chromatin landscape associated with sexual differentiation in a UV sex determination system	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Ectocarpus sp. Ec457 Ectocarpus sp. Ec460	44	BED BW TAB SRA Run Selector	Olivier GODFROY	Mar 21, 2022
GSE71780	Functional interdependency of BRD4 and DOT1L in MLL leukaemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	33	BED	Mark Dawson	Jun 12, 2016
GSE185066	Local euchromatin enrichment in lamina-associated domains anticipates their re-positioning in the adipogenic lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	82	BED BEDGRAPH BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Philippe Collas	Mar 21, 2022
GSE34791	"Calling Cards" for DNA-binding proteins in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED TXT SRA Run Selector	David Mayhew	Dec 31, 2011
GSE118076	(Epi)genetic regulation of zebrafish intestinal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	BED TXT SRA Run Selector	Leonie M Kamminga	Oct 24, 2018
GSE69180	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH TXT	Mark B Meyer	Jun 03, 2015
GSE33923	2C::tomato ES cells, 2-cell embryos and wild type oocytes	Expression profiling by high throughput sequencing	Mus musculus	16	BED CEL	Todd Macfarlan	Jun 18, 2012
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE243915	3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia.	Other Expression profiling by high throughput sequencing	Homo sapiens	59	BED MTX TSV TXT	Javier Rodriguez Hernaez	Sep 25, 2023
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE53310	3P-seq analysis of S. cerevisiae	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	1	BED SRA Run Selector	David E Weinberg	Dec 19, 2013
GSE77645	4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TXT SRA Run Selector	Jane Skok	Feb 27, 2016
GSE112346	4C-seq of insulin promoter, knockdown of INS promoter activity and Genome-wide maps of chromatin state in EndoC-βH1 Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BED	Gary Felsenfeld	Apr 06, 2018
GSE151818	5-hydroxymethylcytosine is Dynamically Regulated During Forebrain Organoid Development and Prematurely Altered in Forebrain Organoids of Alzheimer’s Disease Patients	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	BED DIFF NARROWPEAK SRA Run Selector	Janise Nichole Kuehner	Apr 27, 2021
GSE35238	5-hydroxymethylcytosine is linked with expression of brain-specific protein-coding genes but not brain-specific microRNA host genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BED BEDGRAPH	Sheroy Minocherhomji	Sep 01, 2015
GSE35235	5-hydroxymethylcytosine is linked with expression of brain-specific protein-coding genes but not brain-specific microRNA host genes (RNA-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Sheroy Minocherhomji	Sep 01, 2015
GSE69905	5-hydroxymethylcytosine poises expression of genes involved in hematopoietic differentiation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	14	BED TXT SRA Run Selector	Xavier Tekpli	Jun 02, 2016
GSE131902	5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	57	BED TXT	Martin Bizet	Jul 16, 2020
GSE97992	5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BED BW	Jia Li	Apr 18, 2018