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1706 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BEDGRAPH
GSE79032	RNA Sequencing Reveals that Kaposi Sarcoma-Associated Herpesvirus Infection Mimics Hypoxia Gene Expression Signature	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH	Coralie Viollet	Dec 21, 2016
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE185066	Local euchromatin enrichment in lamina-associated domains anticipates their re-positioning in the adipogenic lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	82	BED BEDGRAPH BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Philippe Collas	Mar 21, 2022
GSE55904	"Drug-seq": An Approach to Identify the Genomic Targets of Chemicals Identified by Functional Phenotypic Screens	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH	MICHAEL G ROSENFELD	Jul 01, 2014
GSE55903	"Drug-seq": An Approach to Identify the Genomic Targets of Chemicals Identified by Functional Phenotypic Screens [GRO-seq]	Expression profiling by high throughput sequencing	Homo sapiens	4	BEDGRAPH SRA Run Selector	MICHAEL G ROSENFELD	Jul 01, 2014
GSE222053	(RNA-seq) Spic regulates one-carbon metabolism and histone methylation in ground-state pluripotency	Expression profiling by high throughput sequencing	Mus musculus	10	BEDGRAPH BW XLSX	Yaser Atlasi	Sep 06, 2023
GSE179017	1,25(OH)2D3 upregulated lncRNA	Expression profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH BW TXT SRA Run Selector	Yoshiaki Kanemoto	Jun 29, 2021
GSE69180	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH TXT	Mark B Meyer	Jun 03, 2015
GSE225363	3'-end sequencing of transcripts from cassava, Manihot esculenta variety TM12	Expression profiling by high throughput sequencing	Manihot esculenta	8	BEDGRAPH	Swetha Chenna	May 28, 2024
GSE99527	3'-seq and RNA-seq of APA modulator_U2OS	Expression profiling by high throughput sequencing Other	Homo sapiens	32	BEDGRAPH	Yusuke Nakayama	Nov 01, 2018
GSE246125	3D genome topology distinguishes molecular subgroups of medulloblastoma	Expression profiling by high throughput sequencing Other	Homo sapiens	55	BEDGRAPH BEDPE BW HIC TSV WIG	Marco Gallo	Sep 29, 2024
GSE146499	3D landscape of Hepatitis B virus interactions with human chromatins	Other Expression profiling by high throughput sequencing	Homo sapiens	11	BEDGRAPH BW	Xiong Ji	May 31, 2022
GSE75584	3´-end sequencing of poly(A)+ RNA in wild-type Saccharomyces cerevisiae and a strain carrying a deletion of the RRP6 nuclear exosome catalytic component	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BEDGRAPH SRA Run Selector	Kevin Roy	Aug 12, 2016
GSE75586	3´-end sequencing of poly(A)+ RNA in wild-type Saccharomyces cerevisiae and nuclear exosome mutant strains	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BEDGRAPH SRA Run Selector	Kevin Roy	Aug 12, 2016
GSE77645	4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TXT SRA Run Selector	Jane Skok	Feb 27, 2016
GSE75318	5'RNA-seq analysis of soleus, tibialis anterior (TA), diaphragm and left ventricle myocardial tissue from adult wild-type mice.	Expression profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH SRA Run Selector	Andrea A. Domenighetti	Nov 25, 2015
GSE35238	5-hydroxymethylcytosine is linked with expression of brain-specific protein-coding genes but not brain-specific microRNA host genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BED BEDGRAPH	Sheroy Minocherhomji	Sep 01, 2015
GSE168353	A Chemical Probe Based on the PreQ1 Metabolite Enables Transcriptome-wide Mapping of Binding Sites	Expression profiling by high throughput sequencing	Homo sapiens	15	BEDGRAPH SRA Run Selector	Curran Rhodes	Aug 09, 2021
GSE159044	A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Cricetulus griseus	72	BED BEDGRAPH TSV SRA Run Selector	Nathan E Lewis	Oct 06, 2020
GSE269235	A Constitutive Heterochromatic Region Shapes Genome Organization and Impacts Gene Expression in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Neurospora crassa	23	BEDGRAPH BIGWIG H5 TXT	Andrew David Klocko	Jun 10, 2024