GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BOWTIE
GSE23316	ENCODE Caltech RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	36	BED12 BEDGRAPH BOWTIE FASTA PSL RPKM SRA Run Selector	ENCODE DCC	Jul 30, 2010
GSE25032	Identification of Neuronal RNA Targets of TDP-43-Containing Ribonucleoprotein Complexes	Expression profiling by high throughput sequencing	Rattus norvegicus	2	BOWTIE TXT SRA Run Selector	Alper Kucukural	Nov 04, 2010
GSE27201	Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (CLIP)	Expression profiling by high throughput sequencing	Mus musculus	2	BOWTIE SRA Run Selector	Gene Yeo	Mar 03, 2011
GSE27218	Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (RNA-seq)	Expression profiling by high throughput sequencing	Mus musculus	21	BOWTIE SRA Run Selector	Gene Yeo	Mar 03, 2011
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE30992	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens synthetic construct	16	BOWTIE FA TXT	Xinchen Wang	Sep 15, 2011
GSE30995	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	3	BOWTIE SRA Run Selector	Xinchen Wang	Sep 15, 2011
GSE31454	Species-specific splicing differences are primarily governed by changes in cis-acting sequences	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BOWTIE SRA Run Selector	Qun Pan	Dec 01, 2012
GSE31531	Genome-wide analysis of STAT3-binding and gene expression changes in peritoneal macrophages upon interleukin-10 stimulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BOWTIE SAM	Andrew P Hutchins	Feb 13, 2012
GSE33772	Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types	Expression profiling by high throughput sequencing	Homo sapiens	3	BOWTIE SRA Run Selector	Julia Salzman	Feb 10, 2012
GSE33776	A novel post-translational mechanism controlling the oncogenic activity of c-Myc is enhanced in poor outcome breast cancer	Expression profiling by high throughput sequencing	Homo sapiens	2	BOWTIE SRA Run Selector	Rosalie Sears	May 28, 2014
GSE34585	Three acyltransferases and a nitrogen responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas	Expression profiling by high throughput sequencing	Chlamydomonas reinhardtii	30	BOWTIE SRA Run Selector	Sabeeha Merchant	Jan 10, 2013
GSE34658	Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	40	BOWTIE MAP	Hang He	Dec 22, 2011
GSE34826	Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-l-galactose phosphorylase	Expression profiling by high throughput sequencing	Chlamydomonas reinhardtii	3	BOWTIE SRA Run Selector	Sabeeha Merchant	May 03, 2012
GSE34993	Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (CLIP-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	15	BOWTIE SRA Run Selector	Gene Yeo	Feb 20, 2012
GSE34995	Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (RNA-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	31	BOWTIE SRA Run Selector	Gene Yeo	Feb 20, 2012
GSE34996	Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	67	BOWTIE CEL	Gene Yeo	Feb 20, 2012
GSE35305	Systems and trans-system level analysis identifies conserved Fe-deficiency responses in the plant lineage	Expression profiling by high throughput sequencing	Chlamydomonas reinhardtii	20	BOWTIE SRA Run Selector	Sabeeha Merchant	Jun 18, 2012
GSE174171	Genetic Dissection of the RNA Polymerase II Transcription Cycle with ChRO-seq from F1 hybrid mice	Expression profiling by high throughput sequencing Other	Mus musculus	67	BOWTIE BW TXT SRA Run Selector	Charles G. Danko	May 31, 2021