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5737 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BW
GSE240585	Baf155 controls hematopoietic differentiation and regeneration through chromatin priming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	ARROW BW MTX TSV	Changxu Fan	Jul 08, 2024
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE109003	Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BAM BW SRA Run Selector	Steven West	Feb 13, 2018
GSE109561	Transcriptome-wide view of endosomal mRNP transport	Other Expression profiling by high throughput sequencing	Ustilago maydis	12	BAM BW	Kathi Zarnack	Dec 10, 2018
GSE141290	Pervasive promoter-proximal regulation in archaea	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Saccharolobus solfataricus Saccharolobus solfataricus P2	84	BAM BW	Finn Werner	Sep 14, 2020
GSE189063	A transcriptional roadblock protects yeast centromeres	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM BW TSV SRA Run Selector	Glennis Amelia Logsdon	Feb 07, 2022
GSE45242	HoxD locus	Other Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Atelerix albiventris Mus musculus	32	BAR BED BEDGRAPH BW CEL	Marion LELEU	Oct 23, 2013
GSE62269	Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by genome tiling array	Mus musculus	10	BAR BEDGRAPH BW CEL	Nicolas Lonfat	Nov 21, 2014
GSE28562	Genome-wide RNA expression in muscle-enriched embryos across different mutations.	Expression profiling by high throughput sequencing	Caenorhabditis elegans	11	BB BW	Diane E Trout	Jun 22, 2012
GSE28563	HLH-1 binding in muscle-enriched embryos and RNA expression in muscle-enriched embryos across different mutations	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	15	BB BW	Diane E Trout	Jun 22, 2012
GSE42819	The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel regulatory architecture	Expression profiling by high throughput sequencing Other	Caenorhabditis elegans	5	BB BW SRA Run Selector	Thomas A Down	Mar 29, 2013
GSE77429	Organ-specific gene expression in single differentiating Drosophila embryos	Expression profiling by high throughput sequencing	Drosophila melanogaster	24	BB BW SRA Run Selector	David Molnar	Feb 01, 2017
GSE77634	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites	Expression profiling by array Expression profiling by high throughput sequencing Other	Homo sapiens	100	BB BED BW CEL	Gene Yeo	Mar 28, 2016
GSE92295	Genetic Redundancy of GATA Factors in Extraembryonic Trophoblast Lineage Ensures Progression of both Pre and Postimplantation Mammalian Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BB BW	Sumedha S Gunewardena	Jan 25, 2017
GSE103225	Transcriptome-pathology correlations predict CSNK1E-mediated TDP-43 phosphorylation in sporadic amyotrophic lateral sclerosis	Expression profiling by high throughput sequencing	Homo sapiens	10	BB BED BW SRA Run Selector	Gene Yeo	Jun 06, 2018
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019