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38 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			FNA
GSE246949	Differential transcriptome analysis of mid-logarithmic and early stationary growth phases of hyperacidophilic archaea Oxiplasma meridianum M1	Expression profiling by high throughput sequencing	archaeon	2	FNA TXT	Rafael María Bargiela Bargiela	Nov 01, 2024
GSE262802	Acanthamoeba castellanii as a model for unveiling Campylobacter jejuni host-pathogen dynamics	Expression profiling by high throughput sequencing	Acanthamoeba castellanii	6	FNA TSV	Fauzy Nasher	Jun 28, 2024
GSE179578	Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia	Expression profiling by high throughput sequencing	Bassia scoparia	27	CSV FNA GFF3 SRA Run Selector	Todd Gaines	Dec 08, 2023
GSE179570	CRISPRi screen for a-amylase yield improvements in Bacillus subtilis	Expression profiling by high throughput sequencing	Bacillus subtilis subsp. subtilis str. 168	8	FNA GFF TSV SRA Run Selector	Christian Anthon	Feb 22, 2023
GSE209539	Differentially Expressed Genes of Pseudomonas aeruginosa Isolates from Eyes with Keratitis and Healthy Conjunctival Sacs	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa	7	FNA TXT	Bin Zhang	Aug 24, 2022
GSE189556	Transcriptomic impact of PrsA over-expression during fed-batch Bacillus subtilis alpha-amylase fermentation	Expression profiling by high throughput sequencing	Bacillus subtilis subsp. subtilis str. 168	41	BED FNA GFF TSV SRA Run Selector	Christian Anthon	Jul 06, 2022
GSE198534	Genetic and transcriptomic characteristics of RhlR-dependent quorum sensing in cystic fibrosis isolates of Pseudomonas aeruginosa: isolate E104	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa	6	FAA FNA GFF GTF TXT XLS	Kyle Lowe Asfahl	Mar 18, 2022
GSE198716	Genetic and transcriptomic characteristics of RhlR-dependent quorum sensing in cystic fibrosis isolates of Pseudomonas aeruginosa: isolate E113	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa	6	FAA FNA GFF GTF TXT	Kyle Lowe Asfahl	Mar 18, 2022
GSE198718	Genetic and transcriptomic characteristics of RhlR-dependent quorum sensing in cystic fibrosis isolates of Pseudomonas aeruginosa: isolate E131	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa	6	FAA FNA GFF GTF TXT XLS	Kyle Lowe Asfahl	Mar 18, 2022
GSE198719	Genetic and transcriptomic characteristics of RhlR-dependent quorum sensing in cystic fibrosis isolates of Pseudomonas aeruginosa: isolate E167	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa	6	FAA FNA GFF GTF TXT XLS	Kyle Lowe Asfahl	Mar 18, 2022
GSE175812	Transcriptomic changes associated with growth of Mycobacterium tuberculosis H37Rv wild-type strain and ∆prpR mutant in mineral medium supplemented with cholesterol as the sole carbon source or standard medium supplemented with vitamin B12.	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis H37Rv	21	FNA GFF TXT SRA Run Selector	Jakub Pawełczyk	May 31, 2021
GSE164282	Influence of dual-species coaggregation on transcriptional changes of Streptococcus gordonii and Fusobacterium nucleatum subsp. polymorphum	Expression profiling by high throughput sequencing	Fusobacterium polymorphum Streptococcus gordonii str. Challis substr. CH1	9	FNA GFF TXT SRA Run Selector	Tingjun Liu	May 20, 2021
GSE150422	Dissecting the co-transcriptome landscape of plants and microbiota	Expression profiling by high throughput sequencing	Acinetobacter sp. Leaf130 Arabidopsis thaliana Arthrobacter sp. Soil763 Burkholderia sp. Leaf177 Chryseobacterium sp. Leaf404 Exiguobacterium sp. Leaf187 Flavobacterium sp. Root935 Pedobacter sp. Leaf176 Plantibacter sp. Leaf1 Rhizobium sp. Leaf155	125	FNA TXT SRA Run Selector	Tatsuya Nobori	Apr 26, 2021
GSE172169	Invariant Natural Killer T Cell Subsets Have Diverse Graft-Versus-Host-Disease-Preventing and Anti-Tumor Effects	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	CSV FNA GFF MTX TSV SRA Run Selector	Juliane Lohmeyer	Apr 23, 2021
GSE155864	Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Tachycineta bicolor	62	FA FNA TSV SRA Run Selector	Kimberly Rosvall	Mar 10, 2021
GSE158565	Callobius koreanus whole body and venom gland transcriptome	Expression profiling by high throughput sequencing	Callobius koreanus	6	FNA GFF3 TXT	Jungsuk Sung	Sep 26, 2020
GSE130190	Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa PAO1 Pseudomonas virus PA5oct	13	FNA GFF3 XLSX SRA Run Selector	Cedric Lood	Jun 04, 2020
GSE139526	Dysbacteriosis-induced LPS elevation disturbs the development of muscle progenitor cells by interfering with retinoic acid signaling	Other Expression profiling by high throughput sequencing	Gallus gallus mouse gut metagenome	13	FNA	Jinhuan Song	May 08, 2020
GSE129581	RNA sequencing of venom glands and venom gland organoids	Expression profiling by high throughput sequencing	Aspidelaps lubricus cowlesi Naja nivea	15	CSV FNA SRA Run Selector	Joep Beumer	Feb 24, 2020
GSE102637	Colonizing and infecting subclones diverge during Staphylococcus aureus infection	Expression profiling by high throughput sequencing	Staphylococcus aureus	8	FNA GTF TXT SRA Run Selector	Kieran Ifan Chacko	Aug 14, 2019