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1045 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			GTF
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE27243	A Transcriptomic Atlas of Mouse Neocortical Layers	Expression profiling by high throughput sequencing	Mus musculus	19	BAM GTF TSV WIG SRA Run Selector	T Grant Belgard	Aug 24, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE32038	Differential Gene and Transcript Expression Analysis with TopHat and Cufflinks	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM DIFF FPKM_TRACKING GTF	Cole Trapnell	Sep 10, 2011
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE49417	The conserved organization of the human and mouse transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	64	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF	ENCODE DCC	Nov 20, 2014
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE66694	Drop-Seq analysis of ERCC spike in capture	Expression profiling by high throughput sequencing Other	synthetic construct	1	BAM FASTA GTF TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE202327	Reference Long-Read Transcriptomes of Human Peripheral Blood Lymphocytes (PacBio Iso-Seq, Matched to Illumina RNA-Seq Data)	Expression profiling by high throughput sequencing	Homo sapiens	4	BB GTF TXT	Eric Christian Rouchka	Sep 16, 2022
GSE202329	Reference Long and Short-Read Transcriptomes of Human Peripheral Blood Lymphocytes	Expression profiling by high throughput sequencing	Homo sapiens	8	BB BW GTF	Eric Christian Rouchka	Sep 16, 2022
GSE82222	Neurospora crassa genome organization requires subtelomeric facultative heterochromatin	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BCF FASTA GTF TDF TXT XLSX SRA Run Selector	Andrew David Klocko	Oct 27, 2016
GSE34448	RNA Subcellular CAGE Localization from ENCODE/RIKEN	Expression profiling by high throughput sequencing	Homo sapiens	78	BED BEDRNAELEMENTS BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Dec 16, 2011
GSE35296	The human pancreatic islet transcriptome: impact of pro-inflammatory cytokines	Expression profiling by high throughput sequencing	Homo sapiens	10	BED GTF SRA Run Selector	Guy Bottu	Mar 09, 2012
GSE46130	Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	10	BED GTF SRA Run Selector	Michael Johannes Ziller	May 01, 2013
GSE48321	High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis	Expression profiling by high throughput sequencing	Rattus norvegicus	8	BED GTF TXT SRA Run Selector	Frédéric Chalmel	Jun 01, 2014
GSE50464	RNA-Seq and BS-Seq of Sorghum bicolor tissues	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Sorghum bicolor	14	BED GTF SRA Run Selector	Andrew J Olson	Aug 29, 2014
GSE56144	Site-Specific Association with Host and Viral Chromatin by KSHV LANA and its Reversal during Lytic Reactivation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	33	BED GTF TXT SRA Run Selector	ALEXANDRE MERCIER	Apr 01, 2014