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1117 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			NARROWPEAK
GSE93431	Two independent modes of chromosome organization are revealed by cohesin removal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	32	BW CSV HDF5 NARROWPEAK TSV TXT SRA Run Selector	Nezar Abdennur	Jun 10, 2017
GSE109292	p53 binding and gene expression profiles in Drosophila postmitotic and embryonic tissue	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BW NARROWPEAK TXT SRA Run Selector	John M Abrams	Jul 15, 2019
GSE151013	Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	BED BROADPEAK NARROWPEAK	Jakub Abramson	Aug 30, 2021
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE189944	Fine-tuned KDM1A alternative splicing regulates human cardiomyogenesis through an enzymatic-independent mechanism	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	68	NARROWPEAK XLSX SRA Run Selector	Antonio Adamo	Jul 01, 2022
GSE222087	Extensive diversity in RNA termination and regulation revealed by transcriptome mapping for the Lyme pathogen B. burgdorferi [3′RNA-seq]	Expression profiling by high throughput sequencing	Borreliella burgdorferi	6	NARROWPEAK	Philip Adams	May 26, 2023
GSE173201	Genomic characterization of cisplatin response uncovers priming of cispla-tin-induced genes in a resistant cell line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW CSV NARROWPEAK SRA Run Selector	Sheera Adar	Jun 07, 2021
GSE226017	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization	Other Expression profiling by high throughput sequencing	Homo sapiens	27	BW HIC NARROWPEAK TXT	MAZHAR ADLI	Jun 16, 2023
GSE121589	Dissecting the Individual and Collective Regenerative Behavior of Muscle Stem Cells During Aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	90	BIGWIG NARROWPEAK TAGALIGN TSV TXT SRA Run Selector	Carlos Aguilar	Aug 30, 2019
GSE262348	NEMO Knockout Drives Variations in Gene Expression Regenerative Trajectory and Induces Chromatin Remodeling in murine muscle satellite cells during healing from traumatic injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BIGWIG NARROWPEAK TSV TXT	Carlos Aguilar	Apr 01, 2024
GSE142811	CRISPRi screen of prostate cancer associated risk cis-regulatory elements	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	NARROWPEAK	Musaddeque Ahmed	Dec 16, 2020
GSE118160	CD4+ T-cell help creates effector memory CTLs with innate and help-independent recall capacities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BROADPEAK NARROWPEAK	Tomasz Ahrends	Oct 23, 2019
GSE85155	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq]	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	52	BED BIGWIG NARROWPEAK SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE87792	A mutually exclusive stem loop arrangement in roX2 RNA is essential for X chromosome regulation in Drosophila	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BED BIGWIG BW GFF NARROWPEAK SRA Run Selector	Asifa Akhtar	Oct 01, 2017
GSE235012	Azin2-dependent transcriptional and epigenetic regulation in adipose tissue and adipocyte progenitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BIGWIG NARROWPEAK TXT ZIP	Ismini Vasileia Alexaki	Jul 03, 2023
GSE202241	Super-enhancer-associated core regulatory circuits mediate susceptibility to retinoic acid in neuroblastoma cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	63	BIGWIG NARROWPEAK TXT	Fahad Ali	Jul 28, 2022
GSE111902	Compendium of CD8+ T cell Data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE206365	HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	79	BIGWIG NARROWPEAK TXT	Jing An	Jan 03, 2023
GSE245529	KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	51	BIGWIG BROADPEAK NARROWPEAK	Jing An	Jul 11, 2024
GSE179778	Comparative analyses of erythroid cells from ES cells and cord blood CD34+ cells reveal mechanisms for defective expansion and enucleation of ES cell-derived erythroid cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	NARROWPEAK TXT SRA Run Selector	Xiuli An	Mar 31, 2022