GEO Browser - GEO

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62 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			PAIR
GSE51238	16q22-24 DNA amplification specifically predicts and mediates, through MAF gene, breast cancer bone metastasis.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	14	CEL PAIR TXT	Evarist Planet Letschert	Oct 01, 2014
GSE49234	A Unifying Model for Molecular Determinants of the Pre-selection Vb Repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	5	GFF GTF PAIR	Eugene M Oltz	Aug 14, 2013
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE51519	Aging signatures developed from a longitudinal study design are dominated by reduced transcription of genes involved in protein synthesis.	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing	Homo sapiens	76	PAIR TXT	Marc Jung	Oct 23, 2014
GSE48105	Analysis Reveal Global Differential Transcritomes of Mesorhizobium huakuii 7653R between Bacteroids and Free-living Cells	Expression profiling by array Expression profiling by high throughput sequencing	Mesorhizobium huakuii 7653R	8	PAIR XLS	Youguo Li	Jun 30, 2014
GSE22512	Analysis of Geobacter sulfurreducens under multiple growth conditions	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Geobacter sulfurreducens PCA	29	BED PAIR WIG	Bernhard Palsson	Jul 01, 2010
GSE55741	Analysis of the impact of FOXA1 expression on MDA::ER E2-sensitive transcriptomes and ER cistromes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	PAIR WIG	Raphaël Métivier	Dec 11, 2022
GSE137643	Ancestral folate promotes neuronal regeneration in serial generations of progeny	Expression profiling by high throughput sequencing Methylation profiling by array	Rattus norvegicus	15	GFF PAIR TXT	Bermans J Iskandar	Mar 01, 2020
GSE58927	Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification	Expression profiling by array Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12	123	PAIR	Robert C Landick	Jul 18, 2014
GSE23168	Assessing the importance of target type for oligonucleotide microarray experiments	Other Expression profiling by high throughput sequencing	Dehalococcoides mccartyi VS Methylosinus trichosporium Methylosinus trichosporium OB3b Sphingomonas paucimobilis	6	PAIR	Peyret Pierre	Jul 27, 2010
GSE30706	Budding yeast mRNA export and processing factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	9	BEDGRAPH GFF PAIR	David L. Bentley	Sep 25, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE46162	Characterization of the regulatory programs governed by ELAV-like proteins in Trypanosoma brucei	Expression profiling by high throughput sequencing Expression profiling by array	Trypanosoma brucei Trypanosoma brucei brucei TREU927	24	PAIR TXT	Hamed S Najafabadi	Apr 18, 2013
GSE42741	Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans	23	BEDGRAPH PAIR WIG	Kohta Ikegami	Sep 05, 2013
GSE35822	Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling	Expression profiling by array Expression profiling by high throughput sequencing Other	Escherichia coli K-12 Klebsiella pneumoniae Klebsiella pneumoniae subsp. pneumoniae MGH 78578	6	PAIR	Donghyuk Kim	Jul 30, 2012
GSE41017	Comparison of the genomic structures and transcription between S. cerevisiae strains ZTW1 and ZGR3	Genome variation profiling by genome tiling array Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	3	PAIR TXT	Daoqiong Zheng	Oct 10, 2012
GSE30206	DNA binding factors shape the mouse methylome at distal regulatory regions.	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Mus musculus	23	PAIR WIG	Dirk Schuebeler	Dec 09, 2011
GSE46954	Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation	Genome binding/occupancy profiling by genome tiling array Methylation profiling by genome tiling array Expression profiling by high throughput sequencing	Mus musculus	63	BEDGRAPH GFF PAIR TXT	Xiwei Wu	Jul 31, 2013
GSE83399	Differential gene expression of zebrafish melanocytes and melanomas (microarray)	Expression profiling by high throughput sequencing	Danio rerio	8	PAIR	Dr Yvonne Edwards, PhD	Feb 14, 2018
GSE55426	Domains of genomewide gene expression dysregulation in Down syndrome	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BW PAIR TXT	Audrey Letourneau	Apr 08, 2014