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56223 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			SRA Run Selector
GSE11892	A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	TXT SRA Run Selector	Marc Sultan	Jul 03, 2008
GSE14782	Mycobacterium marinum chronic infection of adult zebrafish	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	8	XML SRA Run Selector	Anna Magdalena Zakrzewska	Jun 30, 2009
GSE16136	Regulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids	Expression profiling by array Expression profiling by high throughput sequencing	Zea mays	533	TXT SRA Run Selector	Patrick S. Schnable	Nov 20, 2009
GSE16344	Expression in Aneuploid Drosophila S2 Cells	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by array Genome variation profiling by high throughput sequencing	Drosophila melanogaster	38	FTR GPR TXT SRA Run Selector	Brian Oliver	Jan 11, 2010
GSE17403	Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array	Homo sapiens	60	FA GPR TSV TXT SRA Run Selector	Lauro Sumoy	Jul 18, 2011
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE28148	Unamplified Cap Analysis of Gene Expression on a single molecule sequencer (HeliScopeCAGE)	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	19	TXT SRA Run Selector	Hideya Kawaji	Apr 28, 2011
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	22	BED CEL SRA Run Selector	Alexander (Garrett) Garruss	Dec 22, 2011
GSE33252	Chromatin based modeling of transcription rates identifies the contribution of different regulatory layers to steady-state mRNA levels	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	51	CEL WIG SRA Run Selector	Dirk Schuebeler	Jul 23, 2012
GSE51783	Comparison of Poly(A) capture versus Ribosomal RNA depletion methods for RNA-seq	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	59	TXT SRA Run Selector	Charles M. Perou	Aug 20, 2014
GSE108553	Genome-wide transcriptional profiles of Kupffer cells and alveolar macrophages from naïve and LPS-injected mice	Expression profiling by array Expression profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Daun Jung	Dec 27, 2018
GSE168778	Methylated RNA immunoprecipitation sequencing in the Kasumi-1 cell line treated with CoCl2	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	12	TXT SRA Run Selector	Xiao-ning Gao	Mar 12, 2021
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by genome tiling array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	22	CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008
GSE10119	Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment	Expression profiling by high throughput sequencing	marine metagenome	4	XLS SRA Run Selector	Jack Anthony Gilbert	Feb 08, 2008
GSE10968	Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11209	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	1	TXT SRA Run Selector	Zhong Wang	May 05, 2008
GSE11724	Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	TXT SRA Run Selector	Whitehead Institute	Jul 30, 2008
GSE11801	Annotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	TXT SRA Run Selector	Gavin Sherlock	Dec 18, 2008
GSE12416	TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the S. pombe siRNA pathway	Expression profiling by high throughput sequencing	Schizosaccharomyces pombe	2	SRA Run Selector	Noah Spies	Sep 02, 2008
GSE12946	Alternative Isoform Regulation in Human Tissue Transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens	16	TXT SRA Run Selector	Shujun Luo	Oct 01, 2008