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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			TXT	Kornelia Polyak
GSE24491	Gene expression profiling of human tissue samples using SAGE-Seq	Expression profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Oct 05, 2010
GSE25291	Altered antisense-to-sense transcript ratios in breast cancer: Sage-Seq	Expression profiling by high throughput sequencing	Homo sapiens	21	TXT SRA Run Selector	Kornelia Polyak	Dec 10, 2010
GSE25292	Altered antisense-to-sense transcript ratios in breast cancer	Expression profiling by high throughput sequencing Expression profiling by array	Homo sapiens	28	BED TXT	Kornelia Polyak	Dec 10, 2010
GSE26140	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium [SAGE-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	15	TXT SRA Run Selector	Kornelia Polyak	Mar 01, 2011
GSE26141	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	41	TXT	Kornelia Polyak	Mar 01, 2011
GSE22917	SAGE-Seq gene expression profiles of Hs578T, MCF7, and SUM159PT cells treated with STAT3 or non-targeting siRNAs, DMSO, or CXCR2, PTGIS, HAS1, PFKFB3, JAK, or NQO1 inhibitor	Expression profiling by high throughput sequencing	Homo sapiens	27	TXT SRA Run Selector	Kornelia Polyak	Sep 08, 2011
GSE32017	Molecular profiling of human mammary gland links breast cancer risk to a p27+ cell population with progenitor characteristics	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	42	TXT SRA Run Selector	Kornelia Polyak	Jun 13, 2013
GSE45732	Gene expression analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Jun 17, 2014
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE38790	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [DGE]	Expression profiling by high throughput sequencing	Homo sapiens	10	TXT SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE63582	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	28	TXT SRA Run Selector	Kornelia Polyak	Jan 07, 2016
GSE104985	KDM5B links cellular transcriptome heterogeneity to therapy resistance (RNA-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	118	TXT SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE109281	Subclonal cooperation drives metastasis through modulating local and systemic immune microenvironments	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	121	CSV TSV TXT SRA Run Selector	Kornelia Polyak	Sep 24, 2019
GSE131099	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	62	TXT SRA Run Selector	Kornelia Polyak	Mar 30, 2020
GSE131102	Synthetic lethal and resistance interactions with BET bromodomain inhibitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	210	BED BW NARROWPEAK TXT	Kornelia Polyak	Mar 30, 2020
GSE131984	Acquired resistance to combined BET and CDK4/6 inhibition in triple-negative breast cancer [scRNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	8	RDATA TXT SRA Run Selector	Kornelia Polyak	Apr 08, 2020
GSE161420	Divergent resistance mechanisms to HER2-targeted therapies in breast cancer (bulkRNA-Seq and Exome-Seq)	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	60	TSV TXT SRA Run Selector	Kornelia Polyak	Apr 21, 2021
GSE161423	Divergent resistance mechanisms to HER2-targeted therapies in breast cancer	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	64	CSV TXT	Kornelia Polyak	Apr 21, 2021