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1381 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		BED
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE45242	HoxD locus	Other Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Atelerix albiventris Mus musculus	32	BAR BED BEDGRAPH BW CEL	Marion LELEU	Oct 23, 2013
GSE146292	Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BB BED BIGWIG H5 MTX NARROWPEAK TSV SRA Run Selector	Tiago Castro	Jan 04, 2021
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE22959	Sequencing of the non-ribosomal transcriptome allows the simultaneous identification of protein-coding and non-protein-coding RNAs	Expression profiling by high throughput sequencing	Mus musculus	24	BED BEDGRAPH SRA Run Selector	Florian M Pauler	Dec 06, 2011
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE23943	Epigenome and transcriptome of naive pluripotent mouse embryonic stem (ES) cells cultured in 2i serum-free medium	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	41	BED WIG SRA Run Selector	Hendrik Marks	Apr 27, 2012
GSE25115	Interferon-alpha mediates the development of autoimmunity by direct tissue toxicity and through immune-cell recruitment mechanisms	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BED TXT SRA Run Selector	Weijia Zhang	Nov 03, 2011
GSE25549	Polycomb Protein Ezh1 Promotes RNA Polymerase II Elongation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	30	BED TXT SRA Run Selector	Kambiz Mousavi	Nov 23, 2011
GSE26512	Transcriptional activity regulates alternative cleavage and polyadenylation	Expression profiling by high throughput sequencing	Mus musculus	1	BED SRA Run Selector	Zhe Ji	Aug 15, 2011
GSE27016	Estimates of total imprint number withstand transcriptome test	Expression profiling by high throughput sequencing	Mus musculus	2	BED TXT SRA Run Selector	Brian DeVeale	Dec 01, 2011
GSE27037	Regulating RNA Polymerase Pausing and Elongation in Embryonic Stem Cell Transcription	Expression profiling by high throughput sequencing	Mus musculus	5	BED SRA Run Selector	Josh Waterfall	Apr 01, 2011
GSE27921	Intragenic enhancers act as alternative promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	9	BED SAM	Monika S Kowalczyk	Jan 30, 2012
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011