GEO Browser - GEO

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1366 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		BED
GSE45242	HoxD locus	Other Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Atelerix albiventris Mus musculus	32	BAR BED BEDGRAPH BW CEL	Marion LELEU	Oct 23, 2013
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE204851	Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Mus musculus	94	BED	Paola Arlotta	May 31, 2022
GSE30198	Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq	Expression profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens Macaca mulatta Mus musculus Rattus norvegicus	26	BED SRA Run Selector	Adnan Derti	Jun 25, 2011
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus Xenopus tropicalis	30	BED TXT SRA Run Selector	Ozren Bogdanovic	Jan 29, 2016
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	BED TXT SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	75	BED BW H5 TXT	Sanjeev Galande	Sep 02, 2021
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster Mus musculus	22	BED CEL SRA Run Selector	Alexander (Garrett) Garruss	Dec 22, 2011
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE39911	Transcriptome-wide Regulation of Splicing and mRNA Localization by Muscleblind Proteins	Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	55	BED TXT SRA Run Selector	Eric T Wang	Aug 17, 2012
GSE85155	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq]	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	52	BED BIGWIG NARROWPEAK SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE90720	Fox Family Protein Jumu Reads 6mA-DNA Codes and Contributes to Zygotic Gene Activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Macaca mulatta Mus musculus Rattus norvegicus	22	BED TXT SRA Run Selector	Shunmin He	Jan 14, 2023
GSE120220	Harnessing enhanced nucleotide chemistry and toehold nanotechnology to reveal lncRNA spreading on chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	34	BED BEDGRAPH BIGWIG	Matthew D Simon	Mar 11, 2020
GSE184349	Pseudouridylation is coupled with polyadenylation ot promote mRNA stability	Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	40	BED BW TXT SRA Run Selector	linjian xia	Sep 15, 2024
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023