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1089 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		BIGWIG
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE29278	A draft map of cis-regulatory sequences in the mouse genome [RNA-Seq]	Expression profiling by high throughput sequencing	Mus musculus	19	BAM BIGWIG SRA Run Selector	Bing Ren	Jul 01, 2012
GSE30761	Mammalian X upregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Mus musculus Mus musculus x Mus spretus	60	BED BIGWIG CEL GFF PAIR TXT	Xinxian Deng	Jul 19, 2011
GSE30959	Control of Embryonic Stem Cell Lineage Commitment by Core Promoter Factor, TAF3	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BIGWIG TXT	Devin Scannell	Sep 02, 2011
GSE31271	Control of Embryonic Stem Cell Lineage Commitment by Core Promoter Factor, TAF3 (RNA-Seq data)	Expression profiling by high throughput sequencing	Mus musculus	16	BIGWIG SRA Run Selector	Devin Scannell	Sep 02, 2011
GSE32190	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: Thymocytes)	Expression profiling by high throughput sequencing	Mus musculus	7	BAM BEDGRAPH BIGWIG SAM TXT SRA Run Selector	Hilde Schjerven	Sep 08, 2013
GSE33693	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BAM BEDGRAPH BIGWIG SAM TXT	Hilde Schjerven	Sep 08, 2013
GSE36025	Long RNA-seq from ENCODE/Cold Spring Harbor Lab	Expression profiling by high throughput sequencing	Mus musculus	30	BAM BEDRNAELEMENTS BIGWIG TXT SRA Run Selector	ENCODE DCC	Apr 02, 2012
GSE36026	RNA-seq from ENCODE/LICR	Expression profiling by high throughput sequencing	Mus musculus	22	BIGWIG TXT SRA Run Selector	ENCODE DCC	May 10, 2012
GSE37909	RNA-seq from ENCODE/Caltech (Mouse)	Expression profiling by high throughput sequencing	Mus musculus	4	BIGWIG SRA Run Selector	ENCODE DCC	May 10, 2012
GSE38841	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: BCR-ABL transformed in vitro cell culture cells)	Expression profiling by high throughput sequencing	Mus musculus	6	BIGWIG TXT SRA Run Selector	Hilde Schjerven	Sep 08, 2013
GSE39160	Loss of Ikaros tumor suppressor function in a mouse model of BCR-ABL1-induced B-ALL correlates with a developmental block at a highly proliferative stage	Expression profiling by high throughput sequencing	Mus musculus	6	BIGWIG TXT SRA Run Selector	Hilde Schjerven	Feb 06, 2017
GSE39524	RNA-seq from ENCODE/UW	Expression profiling by high throughput sequencing	Mus musculus	25	BIGWIG SRA Run Selector	ENCODE DCC	Jul 20, 2012
GSE39619	RNA-seq from ENCODE/Stanford/Yale	Expression profiling by high throughput sequencing	Mus musculus	4	BIGWIG TXT SRA Run Selector	ENCODE DCC	Jul 25, 2012
GSE39884	Small RNAs in undifferentiated and differentiating mouse embryonic stem cells	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	9	BIGWIG SRA Run Selector	Diane E Trout	Mar 22, 2018
GSE40065	H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BIGWIG	Laurie A Boyer	Sep 23, 2013
GSE40463	STATs Shape the Active Enhancer Landscape of T Cell Populations	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BEDGRAPH BIGWIG RPKM SRA Run Selector	Golnaz Vahedi	Nov 24, 2012
GSE40522	ENCODE PSU Hardison RnaSeq	Expression profiling by high throughput sequencing	Mus musculus	17	BIGWIG SRA Run Selector	ENCODE DCC	Aug 31, 2012
GSE44591	Genome-wide Analysis Reveals SR Protein Cooperation and Competition in Regulated Splicing	Expression profiling by high throughput sequencing	Mus musculus	4	BED BIGWIG SRA Run Selector	Xiang-Dong Fu	Apr 05, 2013
GSE45152	Interrogating translating RNAs and cell-type specific gene expression using Cre-activated translating ribosome affinity purification	Expression profiling by high throughput sequencing Other	Mus musculus	53	BEDGRAPH BIGWIG TXT SRA Run Selector	Fei Gu	Aug 20, 2013