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18 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus			MCOOL
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40		BED BW HIC MCOOL TXT	Wenliang Wang	Feb 24, 2022
GSE181104	Rapid redistribution and extensive co-binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	128		BED BIGWIG BW MCOOL NARROWPEAK	Pedro P Rocha	Jul 29, 2021
GSE247254	YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	121		BED BEDPE BW MCOOL TXT	Jessica C Lam	Jun 17, 2024
GSE260914	ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78		BED BW HIC MCOOL TSV TXT	Mikhail Magnitov	Mar 08, 2024
GSE266750	GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	75		BED BIGWIG MCOOL TXT	Feng Yue	Dec 19, 2024
GSE123245	Setdb1 regulates Cohesin at H3K9me3-independent topological domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37		BEDGRAPH HIC MCOOL TXT	Chadi El Farran	Dec 01, 2020
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107		BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE240023	Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity (OR Switching Experiment)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30		BIGWIG MCOOL TXT	Ariel Pourmorady	Sep 28, 2023
GSE131784	Spen regulates X chromosome inactivation	Expression profiling by high throughput sequencing Other	Mus musculus	73		BW MCOOL TXT	samuel Collombet	Dec 08, 2019
GSE163729	BRD2 regulates accessible genome organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	97		BW HIC MCOOL XLSX SRA Run Selector	Robert Tjian	Feb 09, 2022
GSE178982	Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	173		BW MCOOL SRA Run Selector	Xavier Darzacq	Jul 15, 2021
GSE191312	multi-omic analysis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11		BW CSV MCOOL MTX TSV	John James Tello-Cajiao	Apr 01, 2022
GSE194268	Loss of Cohesin regulator PDS5A reveals repressive role of Polycomb loops	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	115		BW CSV HIC MCOOL	Oliver Bell	Nov 10, 2023
GSE281151	Transient histone deacetylase inhibition induces cellular memory of gene expression and three-dimensional genome folding	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	99		BW MCOOL NARROWPEAK TSV	Marco Di Stefano	Nov 22, 2024
GSE143852	Smc3 regulates B-cell transit through germinal centers and restricts their malignant transformation	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29		CSV MCOOL	Cem Meydan	Oct 13, 2020
GSE198181	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination [Micro-C]	Expression profiling by high throughput sequencing	Mus musculus	2		MCOOL	Maximilian Christian von der Linde	Jan 20, 2023
GSE232194	Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity (Non-coding OR Hi-C & RNA-seq)	Expression profiling by high throughput sequencing Other	Mus musculus	41		MCOOL TXT	Ariel Pourmorady	Sep 28, 2023
GSE234295	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	124		MCOOL WIG	Dirk Schuebeler	Mar 11, 2024