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21209 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		TXT
GSE43013	Gene Expression Defines Natural Changes in Mammalian Lifespan	Expression profiling by high throughput sequencing	Acomys cahirinus Bos taurus Canis lupus familiaris Capra hircus Cavia porcellus Chlorocebus aethiops Equus caballus Erinaceus europaeus Felis catus Meles meles Meriones unguiculatus Mesocricetus auratus Murina leucogaster Mus musculus Oryctolagus cuniculus Peromyscus leucopus Petaurus breviceps Rattus norvegicus Suncus murinus Sus scrofa Tadarida brasiliensis Tamias sibiricus Ursus americanus	141	GTF TXT SRA Run Selector	Alexey Fushan	Feb 17, 2015
GSE71761	Comparing regeneration and fibrosis using Acomys and Mus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	FA TXT XLSX SRA Run Selector	Ashley Seifert	Mar 17, 2016
GSE113081	Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	24	FASTA TXT SRA Run Selector	Jason Orr Brant	Apr 25, 2019
GSE159938	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration [bulk RNA-seq]	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	25	TXT SRA Run Selector	Hans I-Chen Harn	Feb 19, 2021
GSE159939	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	26	TXT	Hans I-Chen Harn	Feb 19, 2021
GSE224433	An ERK-dependent molecular switch antagonizes fibrosis and promotes regeneration in spiny mice (Acomys)	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	6	H5 TXT	PHILIP LIJNZAAD	Apr 28, 2023
GSE190756	Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation	Expression profiling by high throughput sequencing	Acomys russatus Blarina brevicauda Bramus lutescens Castor canadensis Cavia porcellus Chinchilla lanigera Condylura cristata Cricetulus barabensis Cuniculus paca Fukomys damarensis Heterocephalus glaber Hydrochoerus hydrochaeris Marmota monax Mesocricetus auratus Mus musculus Myocastor coypus Neotoma cinerea Octodon degus Ondatra zibethicus Peromyscus maniculatus Rattus rattus Scalopus aquaticus Sciurus carolinensis Tamias striatus Tamiasciurus hudsonicus	522	TXT SRA Run Selector	jinlong lu	May 18, 2022
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE222184	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus II]	Expression profiling by high throughput sequencing	Adeno-associated virus 9 Mus musculus	38	TXT	Joseph Dougherty	Feb 10, 2023
GSE48809	The metabolic niche of a prominent sulfate-reducing human gut bacterium	Expression profiling by high throughput sequencing Other	Agathobacter rectalis ATCC 33656 Bacteroides caccae ATCC 43185 Bacteroides ovatus ATCC 8483 Bacteroides thetaiotaomicron VPI-5482 Collinsella aerofaciens ATCC 25986 Desulfovibrio piger GOR1 Escherichia coli str. K-12 substr. MG1655 Marvinbryantia formatexigens DSM 14469 Mus musculus [Clostridium] symbiosum	135	TXT	Federico E Rey	Jul 12, 2013
GSE108337	Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings	Expression profiling by high throughput sequencing	Alligator mississippiensis Anolis carolinensis Mus musculus	59	TXT SRA Run Selector	Cong Liang	Jun 30, 2019
GSE34394	Three Distinct Phases of Regeneration-Specific Gene Expression in the Axolotl Blastema	Expression profiling by high throughput sequencing	Ambystoma mexicanum Mus musculus	20	TXT SRA Run Selector	Jeff Nie	Sep 01, 2013
GSE201446	Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single cell resolution [scRNA-seq]	Expression profiling by high throughput sequencing	Ambystoma mexicanum Homo sapiens Mus musculus	615	TXT XLSX	Fang Ye	Jun 17, 2022
GSE41338	The evolutionary landscape of alternative splicing in vertebrate species	Expression profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Mus musculus Tetraodon nigroviridis Xenopus tropicalis	21	BW TXT SRA Run Selector	Nuno L Barbosa-Morais	Dec 22, 2012
GSE60373	A relative shift in cloacal location repositions external genitalia in amniote evolution	Expression profiling by high throughput sequencing	Anolis carolinensis Mus musculus	24	TXT SRA Run Selector	Patrick Tschopp	Aug 14, 2014
GSE65786	Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Anolis carolinensis Mus musculus	61	BED2 TXT SRA Run Selector	Xin Li	Feb 03, 2020
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe Xenopus laevis	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024