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2232 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Arabidopsis thaliana
GSE150422	Dissecting the co-transcriptome landscape of plants and microbiota	Expression profiling by high throughput sequencing	Acinetobacter sp. Leaf130 Arabidopsis thaliana Arthrobacter sp. Soil763 Burkholderia sp. Leaf177 Chryseobacterium sp. Leaf404 Exiguobacterium sp. Leaf187 Flavobacterium sp. Root935 Pedobacter sp. Leaf176 Plantibacter sp. Leaf1 Rhizobium sp. Leaf155	125	FNA TXT SRA Run Selector	Tatsuya Nobori	Apr 26, 2021
GSE148670	Transcriptome of Moesziomyces albugensis in response to different biotic factors (A. laibachii & SynCom) on A. thaliana leaves	Expression profiling by high throughput sequencing	Albugo laibachii Arabidopsis thaliana Moesziomyces sp. GD-2020a	15	TXT SRA Run Selector	Gunther Doehlemann	Jan 15, 2021
GSE161595	BRD1/2/13 are new core subunits of Arabidopsis SWI/SNF complexes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	42	BED	yaoguang yu	Mar 22, 2021
GSE176434	Target sites of SWO1 and their expression under salt stress	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	16	BW	Zhidan Wang	Sep 15, 2023
GSE188141	Arabidopsis mutants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	41	BED BW	li peng	Feb 22, 2023
GSE29687	Cis- and trans- regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids	Expression profiling by high throughput sequencing	Arabidopsis arenosa Arabidopsis arenosa x Arabidopsis thaliana Arabidopsis suecica Arabidopsis thaliana	5	TXT SRA Run Selector	Z Jeffrey Jeffrey Chen	May 31, 2012
GSE42957	Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific incompatibility	Expression profiling by high throughput sequencing	Arabidopsis arenosa Arabidopsis thaliana Arabidopsis thaliana x Arabidopsis arenosa	18	TXT SRA Run Selector	Luca Comai	Jun 05, 2013
GSE20451	Arabidopsis thaliana and Arabidopsis lyrata degradomes	Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	4	TXT SRA Run Selector	Michael J Axtell	Apr 22, 2010
GSE28211	Quantification of allele-specific expression patterns in Arabidopsis by tag profiling	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana Arabidopsis thaliana x Arabidopsis lyrata	3	FA TXT	Marnik Vuylsteke	Mar 28, 2014
GSE38113	Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata	Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	7	BED CEL	Felix Ott	May 22, 2012
GSE45687	The Capsella rubella genome and the genomic consequences of rapid mating system evolution	Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana Capsella grandiflora Capsella rubella	22	FPKM_TRACKING	Stephen Wright	Apr 02, 2013
GSE54728	Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana Arabis alpina	30		François ROUDIER	Feb 03, 2015
GSE63462	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor [RNA-Seq]	Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	9	CSV SRA Run Selector	Jose M. Muino	Oct 11, 2015
GSE63464	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	12	CSV	Jose M. Muino	Oct 10, 2015
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE94792	A small RNA pathway mediates allelic dosage in endosperm	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	60	TXT	Mary Gehring	Dec 15, 2017
GSE69077	Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata	Expression profiling by high throughput sequencing	Arabidopsis lyrata subsp. lyrata Arabidopsis thaliana	12	GFF XLSX SRA Run Selector	Ales Pecinka	Aug 01, 2015
GSE69222	Comparative transcriptome profiling of Arabidopsis lyrata and Arabidopsis thaliana	Expression profiling by high throughput sequencing	Arabidopsis lyrata subsp. lyrata Arabidopsis thaliana	7	GFF XLSX SRA Run Selector	Ales Pecinka	Aug 01, 2015
GSE81496	Arabidopsis lyrata gene annotation using RNA-sequencing data	Expression profiling by high throughput sequencing	Arabidopsis lyrata subsp. lyrata Arabidopsis thaliana	19		Ales Pecinka	May 17, 2016
GSE5343	Small RNA identification in Arabidopsis thaliana using 454 data	Expression profiling by high throughput sequencing Expression profiling by MPSS	Arabidopsis thaliana	6		Blake C. Meyers	Sep 08, 2006