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70 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Arabidopsis thaliana		WIG
GSE36631	Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	TAB WIG	Pierre-Étienne Jacques	May 16, 2012
GSE37075	Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons	Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Arabidopsis thaliana	8	PAIR WIG	Hume Stroud	Mar 02, 2013
GSE37160	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG	Eunkyoo Oh	Jul 08, 2012
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE39051	Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	8	BED WIG SRA Run Selector	xiaofeng cao	Jun 30, 2015
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	WIG SRA Run Selector	Christopher Joel Hale	Aug 05, 2012
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	92	WIG SRA Run Selector	Hume Stroud	Jan 11, 2013
GSE42695	Genome-wide profiling of long non-coding RNAs in Arabidopsis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	TXT WIG SRA Run Selector	Yijun Qi	Nov 28, 2015
GSE42901	NOT2 proteins promote Pol II-dependent transcription and interact with multiple miRNA biogenesis factors in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	2	WIG SRA Run Selector	xiaofeng cao	Jan 30, 2013
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE49090	Interplay Between Active Chromatin Marks and RNA-directed DNA Methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	34	WIG SRA Run Selector	Christopher Joel Hale	Nov 01, 2013
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE50942	The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG SRA Run Selector	Hume Stroud	Jul 05, 2014
GSE51121	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	WIG	Kengo Morohashi	Mar 05, 2014
GSE51304	Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	48	TXT WIG SRA Run Selector	Hume Stroud	Dec 15, 2013
GSE51764	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Pattern	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BEDGRAPH WIG	Lan Yang	Oct 29, 2013
GSE54677	Transcriptional gene silencing by Arabidopsis Microrchidia homologues involves the formation of heteromers	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	24	WIG SRA Run Selector	Christopher Joel Hale	Jun 01, 2014
GSE57215	Detection of Pol IV-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	36	WIG SRA Run Selector	shaofang Li	Nov 11, 2014
GSE57954	Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	13	WIG	On Sun Lau	Sep 04, 2014
GSE61439	Pol-IV dependent transcripts in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	42	PDF TXT WIG XLSX SRA Run Selector	Steve Jacobsen	Sep 13, 2015