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1063 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Saccharomyces cerevisiae
GSE11209	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	1	TXT SRA Run Selector	Zhong Wang	May 05, 2008
GSE11801	Annotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	TXT SRA Run Selector	Gavin Sherlock	Dec 18, 2008
GSE11802	Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing	Expression profiling by high throughput sequencing Expression profiling by genome tiling array	Saccharomyces cerevisiae	24	BAR CEL TXT	Gavin Sherlock	Dec 18, 2008
GSE13750	Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	8	TXT SRA Run Selector	Nicholas T Ingolia	Feb 12, 2009
GSE17872	RNAi in budding yeast	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Candida albicans Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Vanderwaltozyma polyspora	15	TXT	David Eric Weinberg	Sep 10, 2009
GSE18591	Gene profiling of TRA1 and tra1-L3733A	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Christopher Brandl	Sep 20, 2010
GSE19685	Identification of ploidy-regulated genes in budding yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	TXT SRA Run Selector	Alex Rolfe	Nov 04, 2010
GSE20749	Natural selection on cis and trans regulation in yeasts	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	24	TXT SRA Run Selector	Li-Ching Hsieh	Apr 02, 2010
GSE21739	Comprehensive comparative analysis of strand-specific RNA sequencing methods	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	15	BEDGRAPH TXT SRA Run Selector	Joshua Z Levin	Aug 15, 2010
GSE22393	Genome-wide Measurement of RNA Secondary Structure in Yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	FASTA TAB WIG SRA Run Selector	Michael Kertesz	Aug 24, 2010
GSE25107	Native elongating transcript sequencing (NET-seq) of wild type Saccharomyces cerevisiae and of DST1, RCO1, SET1, SET2, EAF3 deletion strains	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	7	WIG SRA Run Selector	L. Stirling Stirling Churchman	Jan 19, 2011
GSE25132	[E-MTAB-75] Cryptic unstable transcripts in yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	FNA QUAL TXT	European Bioinformatics Institute	Feb 05, 2011
GSE27934	Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BEDGRAPH	William Tansey	Dec 02, 2011
GSE29018	Pronounced and Extensive Microtubule Defects in a Saccharomyces cerevisiae DIS3 Mutant	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	SAM XLS SRA Run Selector	Daniel Louis Kiss	Jan 01, 2013
GSE29122	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (mRNA-Seq data)	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE29125	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	25	BAM BIGWIG	Jacques Rougemont	Jul 01, 2011
GSE29293	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [RNA_seq]	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	6	WIG SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29294	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	20	BED TXT WIG	Jason D Lieb	Sep 26, 2012
GSE30703	Budding yeast mRNA poly(A) site mapping	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BEDGRAPH SRA Run Selector	David L. Bentley	Sep 25, 2011
GSE30706	Budding yeast mRNA export and processing factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	9	BEDGRAPH GFF PAIR	David L. Bentley	Sep 25, 2011