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48 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Saccharomyces cerevisiae		BEDGRAPH
GSE108059	Spliceosome profiling visualizes the operations of a dynamic RNP in vivo at nucleotide resolution	Expression profiling by high throughput sequencing Other	Cryptococcus neoformans Saccharomyces cerevisiae Schizosaccharomyces pombe	56	BED BEDGRAPH CSV SRA Run Selector	Jordan Emily Burke	Feb 19, 2018
GSE142524	Simple and efficient measurement of transcription initiation and transcript levels with STRIPE-seq	Expression profiling by high throughput sequencing Other	Homo sapiens Saccharomyces cerevisiae	24	BED BEDGRAPH BIGWIG PDF SRA Run Selector	Gabriel E Zentner	Jan 13, 2020
GSE95633	MINC Regulates Pervasive Transcription in Yeast and Mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	117	BEDGRAPH TXT XLSX SRA Run Selector	Siavash K Kurdistani	Jul 08, 2017
GSE21739	Comprehensive comparative analysis of strand-specific RNA sequencing methods	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	15	BEDGRAPH TXT SRA Run Selector	Joshua Z Levin	Aug 15, 2010
GSE27934	Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BEDGRAPH	William Tansey	Dec 02, 2011
GSE30703	Budding yeast mRNA poly(A) site mapping	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BEDGRAPH SRA Run Selector	David L. Bentley	Sep 25, 2011
GSE30706	Budding yeast mRNA export and processing factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	9	BEDGRAPH GFF PAIR	David L. Bentley	Sep 25, 2011
GSE40110	Saccharomyces cerevisiae 3' poly(A) site mapping	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	30	BEDGRAPH SRA Run Selector	Aino Inkeri Järvelin	Jan 10, 2013
GSE44959	CLIP-seq of S. cerevisiae Drn1-TAP and Dbr1-TAP	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BEDGRAPH SRA Run Selector	Jay R. Hesselberth	Jun 28, 2013
GSE49966	Spliceosome-Mediated-Decay (SMD) regulates expression of non-intronic genes in budding yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	BEDGRAPH GTF SRA Run Selector	Sander Granneman	Oct 11, 2013
GSE52119	Evolution of Translation Regulation in budding Yeast	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces paradoxus	12	BED BEDGRAPH TXT SRA Run Selector	Charles Joel McManus	Dec 04, 2013
GSE60947	Genomewide poly(A) site mapping for YJR141W and related mutants	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BEDGRAPH SRA Run Selector	Vicent Pelechano	May 08, 2017
GSE67212	KDM5 Lysine Demethylases Are Involved in Maintenance of 3'UTR Length	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BEDGRAPH	Zongzhi Liu	Mar 23, 2016
GSE70907	Targeted paired-end sequencing of nascent RNA from S. cerevisiae	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	34	BEDGRAPH SRA Run Selector	Lydia Herzel	Mar 24, 2016
GSE70908	Splicing of nascent RNA coincides with intron exit from RNA polymerase II	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae Schizosaccharomyces pombe	44	BED BEDGRAPH SAM	Lydia Herzel	Mar 24, 2016
GSE74454	Synchronized translation programs across cellular compartments	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	36	BEDGRAPH TXT WIG XLSX SRA Run Selector	Mary T Couvillion	May 11, 2016
GSE75584	3´-end sequencing of poly(A)+ RNA in wild-type Saccharomyces cerevisiae and a strain carrying a deletion of the RRP6 nuclear exosome catalytic component	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BEDGRAPH SRA Run Selector	Kevin Roy	Aug 12, 2016
GSE75585	RNA-sequencing of wild-type (HHY168 background), REB1-FRB, and BDP1-FRB Saccharomyces cerevisiae strains	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	6	BEDGRAPH SRA Run Selector	Kevin Roy	Dec 01, 2018
GSE75586	3´-end sequencing of poly(A)+ RNA in wild-type Saccharomyces cerevisiae and nuclear exosome mutant strains	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BEDGRAPH SRA Run Selector	Kevin Roy	Aug 12, 2016
GSE75587	Nuclear exosome	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	18	BEDGRAPH	Kevin Roy	Aug 12, 2016