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56 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Neurospora crassa		TXT
GSE82222	Neurospora crassa genome organization requires subtelomeric facultative heterochromatin	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BCF FASTA GTF TDF TXT XLSX SRA Run Selector	Andrew David Klocko	Oct 27, 2016
GSE118495	ASH-1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	18	BED BIGWIG CSV TDF TXT SRA Run Selector	Vincent T Bicocca	Aug 14, 2018
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020
GSE269235	A Constitutive Heterochromatic Region Shapes Genome Organization and Impacts Gene Expression in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Neurospora crassa	23	BEDGRAPH BIGWIG H5 TXT	Andrew David Klocko	Jun 10, 2024
GSE104019	Telomere repeats induce domains of H3K27 methylation in Neurospora	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Neurospora crassa	34	BEDPE TDF TSV TXT SRA Run Selector	Eric Selker	Dec 29, 2017
GSE99245	The coding and noncoding transcriptome of Neurospora crassa	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	8	BIGWIG TXT SRA Run Selector	Michael Brunner	Jan 23, 2018
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE140787	Identification of a novel fungal PRC2 accessory subunit	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	8	BIGWIG TXT SRA Run Selector	Eric Selker	Mar 30, 2020
GSE146611	The histone variant H2A.Z is required to establish normal patterns of H3K27 methylation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	54	BIGWIG TXT SRA Run Selector	Zachary A Lewis	Mar 31, 2020
GSE150758	IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	94	BW TDF TXT SRA Run Selector	Zachary A Lewis	Jan 05, 2021
GSE168277	The ACF chromatin remodeling complex is essential for Polycomb repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	59	BW TXT SRA Run Selector	Hideki Tanizawa	Mar 08, 2022
GSE88985	The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	20	CSV TXT SRA Run Selector	Nils Thieme	May 19, 2017
GSE100539	Comparative transcriptome of Neurospora crassa strains	Expression profiling by high throughput sequencing	Neurospora crassa	12	CSV TXT SRA Run Selector	Pablo Rodrigo Sanches	Apr 20, 2018
GSE132373	The pH Signaling Transcription Factor PAC-3 Regulates Metabolic and Developmental Processes in Pathogenic Fungi	Expression profiling by high throughput sequencing	Neurospora crassa	12	CSV TXT SRA Run Selector	Pablo Rodrigo Sanches	Sep 10, 2019
GSE168991	Gene expression during conidia germination in Neurospora crassa on Bird medium at 37C	Expression profiling by high throughput sequencing	Neurospora crassa	12	CSV TXT SRA Run Selector	Francesc Lopez	Mar 17, 2022
GSE168992	Gene expression during conidia germination in Neurospora crassa on PDA	Expression profiling by high throughput sequencing	Neurospora crassa	12	CSV TXT SRA Run Selector	Francesc Lopez	Mar 17, 2022
GSE199259	Orphan elements are clustered with allorecognition loci and likely involved in incompatibility and speciation in Neurospora	Expression profiling by high throughput sequencing	Neurospora crassa	5	CSV TXT	Francesc Lopez	Mar 23, 2023
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE78157	Genomic analysis of N. crassa histone H1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	22	TDF TXT SRA Run Selector	Zachary A Lewis	Apr 20, 2016
GSE41484	Multidimensional regulation in transcriptome during sexual development in Neurospora crassa revealed with RNA sequencing	Expression profiling by high throughput sequencing	Neurospora crassa	16	TXT SRA Run Selector	Francesc Lopez	Oct 10, 2013