34 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterExpression profiling by high throughput sequencing Remove filterEscherichia coli BW25113
GSE142817
A novel mechanism of bacteria to adapt to nutrient deprivation via the ribosome silencing factor RsfS (reference number: NMICROBIOL-19112987)
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
20 zhang hong Aug 22, 2022
GSE266148
Adaptation to diverse transcription factor knockouts reveals robustness of transcription regulatory network
  • Expression profiling by high throughput sequencing
46 Bernhard Palsson Dec 04, 2024
GSE184377
Aminoglycosides induce a bacterial senescent state that increases antibiotic tolerance in treatment-naïve cells 
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
18 Christian Thomas Meyer Dec 31, 2022
GSE51052
An Integrated Approach Reveals Regulatory Controls on Bacterial Translation Elongation
  • Expression profiling by high throughput sequencing
11 Arvind R Subramaniam May 15, 2014
GSE221706
Assessing the effects of transcription factor knockouts on growth in high-density fed-batch cultures
  • Expression profiling by high throughput sequencing
122 Cameron Lamoureux Dec 30, 2022
GSE46507
Comparison of the nucleotide-resolution, genome-wide, 5'-end maps of the transcriptomes of Escherichia coli K12 strain BW25113 and Streptomyces coelicolor A3(2) strain M145
  • Expression profiling by high throughput sequencing
4 David Romero A. May 01, 2013
GSE184365
Development of miniBac-seq to profile bacterial transcriptome from ultra-low input RNA amount
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
40 Tianmin Wang Jun 30, 2022
GSE135949
Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria
39 Xiaolin Wu May 21, 2020
GSE136101
Escherichia coli transcriptome reorganization caused by nutritional changes
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
6 Bei-Wen Ying Aug 31, 2020
GSE59759
Expression Profiling of E. coli K-12 BW25113 in Minimal Media with Different Carbon Sources
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
8 Bernhard Palsson Feb 14, 2017
GSE59760
Expression Profiling of E. coli K-12 BW25113 in Minimal Media with Glucose and Amino Acid Supplementations
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
4 Bernhard Palsson Feb 14, 2017
GSE122211
Expression profiling of E. coli K-12 MG1655
  • Expression profiling by high throughput sequencing
12 Anand Sastry Dec 17, 2019
GSE236554
Fosfomycin uptake in Escherichia coli is mediated by the outer membrane porins OmpF, OmpC and LamB
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
3 Kay Nieselt Jan 24, 2024
GSE151022
Gene expression in RpoB-P153L
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
24 Anthony Lyndon Shiver May 22, 2020
GSE228051
Genome-wide screening reveals metabolic regulation of translational fidelity by cyclic AMP
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
4 Jiqiang Ling Mar 28, 2023
GSE115330
Impact of heavy atmospheric pollution on the transcriptome of Escherichia coli BW25113 and the adapted E. coli strain T56-1
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
12 Pier-Luc Tremblay Aug 07, 2019
GSE136977
Measuring gene expression in serially-evolved E. coli BW25113 strains in M9+glucose and M9+glucose+rifampicin
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
72 Sean Crosson Oct 23, 2020
GSE195463
MiniBac-seq enables bacterial RNA-seq from ultra-low input and profiling cells with arrested growth
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
44 Tianmin Wang Jul 22, 2022
GSE110137
Mode of action characterization of antibiotics using expression profile fingerprints generated by RNA-sequencing technology
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
57 Roland Schmucki Mar 25, 2019
GSE260455
Motility-activating mutations upstream of flhDC reduce acid shock survival of Escherichia coli
  • Expression profiling by high throughput sequencing
12 Kilian Schumacher Apr 14, 2024