34 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterExpression profiling by high throughput sequencing Remove filterEscherichia coli BW25113
GSE136101
Escherichia coli transcriptome reorganization caused by nutritional changes
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
6 Bei-Wen Ying Aug 31, 2020
GSE135938
RNA-seq analysis for E.coli dnd and dam derivatives
  • Expression profiling by high throughput sequencing
3 Xiaolin Wu May 21, 2020
GSE135949
Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria
39 Xiaolin Wu May 21, 2020
GSE184365
Development of miniBac-seq to profile bacterial transcriptome from ultra-low input RNA amount
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
40 Tianmin Wang Jun 30, 2022
GSE195463
MiniBac-seq enables bacterial RNA-seq from ultra-low input and profiling cells with arrested growth
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
44 Tianmin Wang Jul 22, 2022
GSE197541
RAINBOW-seq to capture the spatial transcriptome of bacterial biofilm
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
38 Tianmin Wang Jan 01, 2023
GSE115330
Impact of heavy atmospheric pollution on the transcriptome of Escherichia coli BW25113 and the adapted E. coli strain T56-1
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
12 Pier-Luc Tremblay Aug 07, 2019
GSE114871
Transcriptional profiling to elucidate processes regulated by 2',3'-cyclic nucleotide monophosphates in Escherichia coli
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
6 Gregory K Tharp May 23, 2021
GSE73672
Targeted experimentation to increase functional coverage in omics dataset
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
87 Ilias Tagkopoulos Sep 03, 2016
GSE73673
Transcriptome profiling of 15 conditions for Escherichia coli selected from optimal experiment design, and targeted experimentation to increase functional coverage in omics dataset
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
87 Ilias Tagkopoulos Sep 03, 2016
GSE51052
An Integrated Approach Reveals Regulatory Controls on Bacterial Translation Elongation
  • Expression profiling by high throughput sequencing
11 Arvind R Subramaniam May 15, 2014
GSE151022
Gene expression in RpoB-P153L
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
24 Anthony Lyndon Shiver May 22, 2020
GSE260455
Motility-activating mutations upstream of flhDC reduce acid shock survival of Escherichia coli
  • Expression profiling by high throughput sequencing
12 Kilian Schumacher Apr 14, 2024
GSE110137
Mode of action characterization of antibiotics using expression profile fingerprints generated by RNA-sequencing technology
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
57 Roland Schmucki Mar 25, 2019
GSE122211
Expression profiling of E. coli K-12 MG1655
  • Expression profiling by high throughput sequencing
12 Anand Sastry Dec 17, 2019
GSE46507
Comparison of the nucleotide-resolution, genome-wide, 5'-end maps of the transcriptomes of Escherichia coli K12 strain BW25113 and Streptomyces coelicolor A3(2) strain M145
  • Expression profiling by high throughput sequencing
4 David Romero A. May 01, 2013
GSE59759
Expression Profiling of E. coli K-12 BW25113 in Minimal Media with Different Carbon Sources
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
8 Bernhard Palsson Feb 14, 2017
GSE59760
Expression Profiling of E. coli K-12 BW25113 in Minimal Media with Glucose and Amino Acid Supplementations
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
4 Bernhard Palsson Feb 14, 2017
GSE182695
Systems approach for identification of the Escherichia coli K-12 LysR-type transcriptional regulators function.
  • Expression profiling by high throughput sequencing
  • Link icon Escherichia coli BW25113
16 Bernhard O. Palsson Aug 23, 2022
GSE266148
Adaptation to diverse transcription factor knockouts reveals robustness of transcription regulatory network
  • Expression profiling by high throughput sequencing
46 Bernhard Palsson Dec 04, 2024