CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura

Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models

Drosophila DrosDel deficiency and diploid control flies

Drosophila melanogaster late third instar larval ovary and gonadal fatbody polyA+ RNA-Seq profiling.

Drosophila melanogaster late third instar larval testes and gonadal fatbody RNA-seq profiling

Expression in Aneuploid Drosophila S2 Cells

Expression profiling individual DrosDel flies heterozygous for deletions of chromosome 2L in a hybrid background

Expression profiling pooled Drosophila melanogaster heterozygous for deletions on Chromosome 2L

Gene expression following: RNAi knockdown of grappa, lilliputian, or Suppressor of Triplolethal; induction of Cyclin-dependent kinase 9 dominant negative constructs, or ectopic expression of stand still in Drosophila melanogaster.

Gene expression profiling of Drosophila S2R+ cells following RNAi-mediated knockdown of transcription factors

Identification of transcripts whose abundance changes in response to acute switches in DSX isoform

Identification of transcripts whose abundance changes in response to acute switches in DSX isoform in the ovary and testis

Identifying targets of DSX with ChIP-seq, DamID-seq and DamID-chip and transcriptional response to DSX isoform switch

PolyA+ expression profiling of tubulin Gal4 driven targeted DamID in Drosophila melanogaster adults and gonads

RNA-Seq of female, male, and sex-transformed Drosophila melanogaster heads from flies heterozygous for deletions on chromosome X and 3L

RNA-Seq on Illumina platform of Drosophila DrosDel deficiency lines

RNA-Seq on SOLiD platform of DrosDel deficiency and w1118 flies

RNA-Seq on libraries made from ERCC external RNA controls, and a mixture of D. melanogaster S2 cell mRNA and ERCC mRNAs

RNA-Seq on libraries made from serial dilutions of Drosophila melanogaster S2 cell mRNA and ERCC external RNA controls

RNA-Seq profiles of Drosophila melanogaster S3 cells treated with novel lipid storage inhibitors