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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Drosophila melanogaster			BAM
GSE33475	The exon junction complex is restricted to a specific subset of splice junctions	Expression profiling by high throughput sequencing	Drosophila melanogaster	3		BAM BED SRA Run Selector	Marco Blanchette	Nov 04, 2014
GSE24012	Transcriptional profiling of EJC depletion by RNA-Seq using the SOLiD platform (Applied Biosystems)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6		BAM TXT WIG SRA Run Selector	Hugo Lavoie	Oct 20, 2010
GSE32038	Differential Gene and Transcript Expression Analysis with TopHat and Cufflinks	Expression profiling by high throughput sequencing	Drosophila melanogaster	6		BAM DIFF FPKM_TRACKING GTF	Cole Trapnell	Sep 10, 2011
GSE34281	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression (RNA-seq data)	Expression profiling by high throughput sequencing	Drosophila melanogaster	13		BAM SRA Run Selector	Julia Zeitlinger	Dec 20, 2012
GSE83305	Stable Binding of the Conserved Transcription Factor Grainy Head to Its Target Genes Throughout Drosophila melanogaster Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	19		BAM BED TXT WIG SRA Run Selector	Melissa M Harrison	Feb 02, 2017
GSE29991	Messenger RNA is a functional component of a chromatin insulator complex	Expression profiling by high throughput sequencing	Drosophila melanogaster	31		BAM SRA Run Selector	Ryan Dale	Aug 06, 2013
GSE28078	mRNA-Seq of whole flies from Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	32		BAM RPKM TXT SRA Run Selector	Brian Oliver	Mar 23, 2011
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89		BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila rhopaloa Drosophila simulans Drosophila takahashii Drosophila virilis Drosophila yakuba	93		BAM BED RPKM TXT	Brian Oliver	Feb 25, 2013
GSE31407	Drosophila DrosDel deficiency and diploid control flies	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	203		BAM PAIR SAM	Brian Oliver	Apr 03, 2012