GEO Browser - GEO

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104 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Drosophila melanogaster		BED
GSE15292	Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	936	BED BEDGRAPH TXT	Kevin P. White	Mar 20, 2009
GSE18068	Genome-wide transcriptome sequencing at different stages of Drosophila development, RNA-seq	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BED BEDGRAPH SRA Run Selector	Kevin P. White	Sep 12, 2009
GSE18572	Discrete genomic domains exhibit co-occurrence of H3K9me3 and H3K27me3 histone modifications throughout Drosophila	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	49	BED BEDGRAPH TXT	Kevin P. White	Oct 16, 2009
GSE20421	Regulatory Divergence in Drosophila revealed by mRNA-seq	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila melanogaster x Drosophila sechellia Drosophila sechellia	4	BED SRA Run Selector	Brenton R Graveley	Feb 20, 2010
GSE19325	Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	9	BED BEDGRAPH XLS SRA Run Selector	Dustin E Schones	Apr 16, 2010
GSE31900	Developmental Control of Gene Copy Number by Repression of Replication Initiation and Fork Progression	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome variation profiling by genome tiling array Expression profiling by high throughput sequencing	Drosophila melanogaster	16	BED TXT WIG	Terry L. Orr-Weaver	Oct 18, 2011
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster Mus musculus	22	BED CEL SRA Run Selector	Alexander (Garrett) Garruss	Dec 22, 2011
GSE29972	Deep sequencing the circadian transcriptome of Drosophila brain	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	24	BED BEDGRAPH TXT SRA Run Selector	Michael Hughes	Jan 01, 2012
GSE36108	Deep sequencing the circadian and light-dependent transcriptome of Drosophila brain	Expression profiling by high throughput sequencing	Drosophila melanogaster	24	BED BEDGRAPH TXT SRA Run Selector	Michael Hughes	Mar 27, 2012
GSE38748	Fcp1 dephosphorylation of the RNA polymerase II C-terminal domain required for efficient transcription of heat shock genes	Expression profiling by high throughput sequencing	Drosophila melanogaster	4	BED SRA Run Selector	Nicholas Fuda	Jun 29, 2012
GSE39911	Transcriptome-wide Regulation of Splicing and mRNA Localization by Muscleblind Proteins	Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	55	BED TXT SRA Run Selector	Eric T Wang	Aug 17, 2012
GSE36213	Profiling of transcription start site expression in Drosophila and the human K562 cell line using RAMPAGE	Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	37	BED BW	Philippe Batut	Aug 29, 2012
GSE36212	Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation	Expression profiling by high throughput sequencing	Drosophila melanogaster	36	BED BW TXT SRA Run Selector	Philippe Batut	Aug 30, 2012
GSE24449	Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	21	BED TXT WIG SRA Run Selector	Kevin P. White	Nov 08, 2012
GSE41729	Transcriptional silencing of transposable elements by Piwi and its impact on chromatin and gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	32	BED BW SRA Run Selector	Grzegorz Sienski	Nov 26, 2012
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE41950	Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	48	BED CSV SRA Run Selector	Ryan Dale	Jan 29, 2013
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila rhopaloa Drosophila simulans Drosophila takahashii Drosophila virilis Drosophila yakuba	93	BAM BED RPKM TXT	Brian Oliver	Feb 25, 2013
GSE42399	Genome-wide control of RNA polymerase II activity by cohesin	Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Drosophila melanogaster	14	BAR BED BEDGRAPH CEL	Cheri A Schaaf	Apr 24, 2013
GSE46009	A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	37	BED TXT SRA Run Selector	Felix Muerdter	May 09, 2013