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102 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Drosophila melanogaster		BED
GSE205387	Shared enhancer gene regulatory networks between wound and oncogenic programs [Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	6	BED MTX TSV	Stein Aerts	Jun 16, 2022
GSE60215	A streamline experimental and computational approach for inexpensive, accurate, efficient and high-throughput annotation of 5’ and 3’ ends	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	54	BED TDF TXT WIG SRA Run Selector	Shaked Afik	Feb 13, 2017
GSE74581	Predicting microRNA targeting efficacy in Drosophila	Expression profiling by high throughput sequencing	Drosophila melanogaster	10	BED TXT SRA Run Selector	Vikram Agarwal	Jul 10, 2018
GSE85155	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq]	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	52	BED BIGWIG NARROWPEAK SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE87792	A mutually exclusive stem loop arrangement in roX2 RNA is essential for X chromosome regulation in Drosophila	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BED BIGWIG BW GFF NARROWPEAK SRA Run Selector	Asifa Akhtar	Oct 01, 2017
GSE109588	Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities	Expression profiling by high throughput sequencing	Drosophila melanogaster	8	BED SRA Run Selector	Robin Andersson	Mar 22, 2018
GSE83409	Chromatin Binding of Gcn5 in Drosophila is Largely Mediated by CP190	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	12	BED	Marek Bartkuhn	Dec 05, 2016
GSE36212	Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation	Expression profiling by high throughput sequencing	Drosophila melanogaster	36	BED BW TXT SRA Run Selector	Philippe Batut	Aug 30, 2012
GSE36213	Profiling of transcription start site expression in Drosophila and the human K562 cell line using RAMPAGE	Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	37	BED BW	Philippe Batut	Aug 29, 2012
GSE89299	Drosophila melanogaster embryonic development RAMPAGE time series (Biological replicate #2)	Expression profiling by high throughput sequencing	Drosophila melanogaster	23	BED BW TXT SRA Run Selector	Philippe Batut	Dec 19, 2017
GSE33475	The exon junction complex is restricted to a specific subset of splice junctions	Expression profiling by high throughput sequencing	Drosophila melanogaster	3	BAM BED SRA Run Selector	Marco Blanchette	Nov 04, 2014
GSE56551	Transcriptional activation without chromatin marking in developmentally regulated genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	13	BED WIG	Enrique Blanco	Jul 23, 2015
GSE125604	Context-dependent gene regulation by homeodomain transcription factor complexes revealed by shape-readout deficient proteins	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster	33	BED BW HIC SRA Run Selector	Harmen J Bussemaker	Jan 27, 2020
GSE74080	Massive redeployment of PRC1 proteins suppresses tumor formation during Drosophila development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	16	BED XLS SRA Run Selector	Giacomo Cavalli	Jul 18, 2016
GSE112972	Somatic piRNA pathway prevents transgenerational germline transposition	Other Expression profiling by high throughput sequencing	Drosophila melanogaster	28	BED TXT	SEVERINE CHAMBEYRON	Aug 09, 2018
GSE198761	Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements [RNA-seq]	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BED WIG	Jia-Ming Chang	Jul 19, 2022
GSE198763	Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	44	BED GCMAP WIG	Jia-Ming Chang	Jul 19, 2022
GSE160931	Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	16	BED BIGWIG TXT	Eleanor Josephine Clowney	Jan 22, 2021
GSE250351	Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	37	BED BW	BiNGS Core	May 29, 2024