mRNA-Seq of whole flies from Drosophila

Tag-seq profiling in eye-antennal and wing imaginal discs of D. melanogaster, D. yakuba and D. virilis

Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs.

Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models

Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression (part 1)

Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression

Transcriptome changes associated with cold acclimation in two species of the Drosophila virilis group

Evolutionary changes in cis regulation are associated with altered chromatin activity and gene expression levels in the Drosophila eye development (RNA-Seq)

A trans-generational epigenetic process defines piRNA biogenesis in Drosophila virilis

RNA profiling in Drosophila virilis and Drosophila yakuba

The evolution of genic piRNA cluster loci expression patterns

Embryonic small RNA and RNA profiles of Tribolium castaneum and Drosophila oocytes

Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols

Sex bias and maternal contribution to gene expression divergence in Drosophila blastoderm embryos

Developmental hotspots drive transcriptional variability and convergence in the Drosophila olfactory system

Evolution of A-to-I RNA Editing in Drosophila

A-to-I RNA Editing in Drosophila

The Drosophila Embryo at Single-Cell Transcriptome Resolution

RNA-seq of sexed adult tissues/body parts from eight Drosophila species

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species