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43413 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens
GSE7055	Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer	Expression profiling by array Non-coding RNA profiling by array Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	114	CEL GPR	Robert Scott Hudson	Jul 01, 2008
GSE11839	Differentiation associated changes in gene expression profiles for interstitial cystitis and control urothelial cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	12	CEL PDF	Deborah Erickson	Sep 05, 2008
GSE11892	A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	TXT SRA Run Selector	Marc Sultan	Jul 03, 2008
GSE12075	The impact of microRNAs on protein output	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	24	CEL TXT	Whitehead Institute	Jul 30, 2008
GSE12297	mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum	Expression profiling by high throughput sequencing	Homo sapiens	20		Stephen Kingsmore	Nov 12, 2008
GSE12946	Alternative Isoform Regulation in Human Tissue Transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens	16	TXT SRA Run Selector	Shujun Luo	Oct 01, 2008
GSE13652	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing	Expression profiling by high throughput sequencing	Homo sapiens	6	TXT SRA Run Selector	Weijun Gao	Nov 19, 2008
GSE14092	An Integrated Network of Androgen Receptor and TMPRSS2-ERG Gene Fusion in Prostate Cancer Progression (II)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	60	TXT SRA Run Selector	Jindan Yu	May 18, 2010
GSE14097	An Integrated Network of Androgen Receptor and TMPRSS2-ERG Gene Fusion in Prostate Cancer Progression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	75	TXT	Jindan Yu	May 18, 2010
GSE15780	Interplay between c-Jun and TAp73α/β contributes to the apoptosis-survival balance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	15	BED TSV TXT SRA Run Selector	Marion Lohrum	Mar 01, 2011
GSE16190	Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq	Expression profiling by high throughput sequencing	Homo sapiens	2	TXT SRA Run Selector	Iouri Chepelev	Jun 15, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE16642	Illumina mRNA-Seq of control and hnRNP H knockdown in 293T cells	Expression profiling by high throughput sequencing	Homo sapiens	2	TXT SRA Run Selector	Xinshu Xiao	Sep 13, 2009
GSE16921	Polymorphic cis- and trans-regulation of human gene expression	Expression profiling by high throughput sequencing	Homo sapiens	41	MAP TXT SRA Run Selector	Michael Patrick Morley	Sep 20, 2010
GSE17274	Sex-specific and lineage-specific alternative splicing in primates	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	36	TXT SRA Run Selector	Ran Blekhman	Dec 01, 2009
GSE17403	Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis	Expression profiling by array Genome variation profiling by genome tiling array Expression profiling by high throughput sequencing	Homo sapiens	60	FA GPR TSV TXT SRA Run Selector	Lauro Sumoy	Jul 18, 2011
GSE17593	Melanoma short-term cultures and cell lines: expression profiling and CNV analyses	Expression profiling by array Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	41	BAM CEL	Michael Berger	Feb 01, 2010
GSE18156	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.	Expression profiling by high throughput sequencing	Homo sapiens	2	MAP SRA Run Selector	Jacob F Degner	Oct 22, 2009
GSE18245	Elucidating the stromal expression pattern in response to tumor-derived Shh	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	4	TXT SRA Run Selector	henk roelink	Sep 24, 2010