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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens			Kornelia Polyak
GSE25292	Altered antisense-to-sense transcript ratios in breast cancer	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	28	BED TXT	Kornelia Polyak	Dec 10, 2010
GSE22917	SAGE-Seq gene expression profiles of Hs578T, MCF7, and SUM159PT cells treated with STAT3 or non-targeting siRNAs, DMSO, or CXCR2, PTGIS, HAS1, PFKFB3, JAK, or NQO1 inhibitor	Expression profiling by high throughput sequencing	Homo sapiens	27	TXT SRA Run Selector	Kornelia Polyak	Sep 08, 2011
GSE24491	Gene expression profiling of human tissue samples using SAGE-Seq	Expression profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Oct 05, 2010
GSE25291	Altered antisense-to-sense transcript ratios in breast cancer: Sage-Seq	Expression profiling by high throughput sequencing	Homo sapiens	21	TXT SRA Run Selector	Kornelia Polyak	Dec 10, 2010
GSE25932	Altered antisense-to-sense transcript ratios in breast cancer: ASSAGE	Expression profiling by high throughput sequencing	Homo sapiens	3	BED SRA Run Selector	Kornelia Polyak	Dec 10, 2010
GSE26140	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium [SAGE-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	15	TXT SRA Run Selector	Kornelia Polyak	Mar 01, 2011
GSE26141	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	41	TXT	Kornelia Polyak	Mar 01, 2011
GSE32017	Molecular profiling of human mammary gland links breast cancer risk to a p27+ cell population with progenitor characteristics	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	42	TXT SRA Run Selector	Kornelia Polyak	Jun 13, 2013
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by SNP array Methylation profiling by array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE38790	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [DGE]	Expression profiling by high throughput sequencing	Homo sapiens	10	TXT SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE45732	Gene expression analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Jun 17, 2014
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE63582	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	28	TXT SRA Run Selector	Kornelia Polyak	Jan 07, 2016
GSE63584	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	65	WIG	Kornelia Polyak	Jan 07, 2016
GSE69114	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	10	FPKM_TRACKING SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE104985	KDM5B links cellular transcriptome heterogeneity to therapy resistance (RNA-Seq)	Expression profiling by high throughput sequencing	Homo sapiens	118	TXT SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE104987	KDM5B links cellular transcriptome heterogeneity to therapy resistance (inDrop)	Expression profiling by high throughput sequencing	Homo sapiens	3	TSV SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE109281	Subclonal cooperation drives metastasis through modulating local and systemic immune microenvironments	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	121	CSV TSV TXT SRA Run Selector	Kornelia Polyak	Sep 24, 2019
GSE113909	Myoepithelial cell perturbations in BRCA mutation carriers and in DCIS (ductal carcinoma in situ)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BED NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Aug 20, 2019