GEO Browser - GEO

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47 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		BAM
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17593	Melanoma short-term cultures and cell lines: expression profiling and CNV analyses	Expression profiling by array Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	41	BAM CEL	Michael Berger	Feb 01, 2010
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE20156	RNA-Seq of melanoma short-term cultures and cell lines	Expression profiling by high throughput sequencing	Homo sapiens	14	BAM SRA Run Selector	Michael Berger	Feb 04, 2010
GSE25183	Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression (RNA-Seq data)	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	58	BAM SRA Run Selector	Matthew Iyer	Aug 02, 2011
GSE25840	Widespread RNA and DNA Sequence Differences in the Human Genome	Third-party reanalysis Expression profiling by high throughput sequencing	Homo sapiens		BAI BAM	Mingyao Li	May 19, 2011
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE26811	Transcriptomics of a novel trophoblast differentiation protocol applied to human embryonic stem cells	Expression profiling by high throughput sequencing	Homo sapiens	5	BAM SRA Run Selector	Paul Robson	May 01, 2014
GSE27221	ENCODE Genome Institute of Singapore RNA-Seq	Expression profiling by high throughput sequencing	Homo sapiens	4	BAM BIGWIG SRA Run Selector	ENCODE DCC	Feb 14, 2011
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE29069	Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BAM	Gary Chung Hon	Sep 16, 2011
GSE29098	ChimeraScan: A tool for identifying chimeric transcription in sequencing data	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM BEDPE SRA Run Selector	Matthew Iyer	Sep 01, 2011
GSE29119	Gene expression analysis of breast cancer (HCC1954) and normal breast cells (HMEC)	Expression profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29155	RNA-Seq anlalysis of prostate cancer cell lines using Next Generation Sequencing	Expression profiling by high throughput sequencing	Homo sapiens	11	BAM SRA Run Selector	Jung Kim	May 09, 2011
GSE29968	RNA Sequencing Analysis Generates Comprehensive Transcriptomic Landscape and Identifies PTK6 as a Novel Tumor Suppressor Gene in Esophageal Squamous Cell Carcinoma	Expression profiling by high throughput sequencing	Homo sapiens	6	BAM SRA Run Selector	Yunjuan Bao	Jun 01, 2012
GSE30400	RNA-Seq in GM12878 (ENCODE Project)	Expression profiling by high throughput sequencing	Homo sapiens	1	BAM SRA Run Selector	Joel Rozowsky	Jul 09, 2011
GSE30401	AlleleSeq: Analysis of Allele-Specific Expression and Binding in a Network Framework	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BAM NARROWPEAK TAGALIGN	Joel Rozowsky	Jul 09, 2011
GSE30554	Integrative Annotation of Human Large Intergenic Non-Coding RNAs Reveals Global Properties and Specific Subclasses	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	9	BAM SRA Run Selector	Nataly Moran Cabili	Aug 28, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011