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2659 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		BW
GSE84365	RNA-seq and ChIP-seq data of ASXL1/2 in Hematopoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	54	BIGWIG BW TXT	Omar Abdel-Wahab	Jun 26, 2017
GSE114558	Targeting an RNA-binding Protein Splicing Network in Acute Myeloid Leukemia	Expression profiling by high throughput sequencing	Homo sapiens	39	BW TXT SRA Run Selector	Omar Abdel-Wahab	Feb 25, 2019
GSE119103	Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in chronic lymphocytic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	90	BW TXT SRA Run Selector	Omar Abdel-Wahab	May 02, 2019
GSE199539	A genome-wide CRISPR activation screen identifies PRRX2 as a regulator of enzalutamide resistance in prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BW TXT	Sarki Abdulkadir	Mar 30, 2022
GSE212077	STAT3 couples activated tyrosine kinase signaling to the oncogenic core transcriptional regulatory circuitry of anaplastic large cell lymphoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	47	BW TXT	Brian J Abraham	Aug 26, 2022
GSE159134	p53 directly represses human LINE1 transposons	Expression profiling by high throughput sequencing	Homo sapiens	4	BW TAB SRA Run Selector	John M Abrams	Dec 01, 2020
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE132840	eXcision Repair-sequencing (XR-seq) to map UV induced damage in U2OS cells and in U2OS cells in which CSA or UVSSA genes were knocked out	Expression profiling by high throughput sequencing	Homo sapiens	9	BW SRA Run Selector	Sheera Adar	Apr 13, 2020
GSE173201	Genomic characterization of cisplatin response uncovers priming of cispla-tin-induced genes in a resistant cell line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW CSV NARROWPEAK SRA Run Selector	Sheera Adar	Jun 07, 2021
GSE198517	Inhibition of SWI/SNF broadly disrupts enhancers and reveals remodeler redundancy at promoters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	107	BW TSV XLSX	Karen Adelman	Nov 02, 2023
GSE198518	Splicing modulators impair DNA damage response and induce killing of cohesin-mutant MDS/AML	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	46	BW TSV TXT	Karen Adelman	Jun 30, 2023
GSE188486	Leveraging the Epigenomic Landscape to identify Histology-Specific Master transcription factors and to functionally annotate risk loci in renal cell carcinoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	144	BED BW TSV SRA Run Selector	Elio Adib	Nov 01, 2022
GSE226014	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_2D_RNA_seq]	Expression profiling by high throughput sequencing	Homo sapiens	12	BW TXT	MAZHAR ADLI	Jun 16, 2023
GSE226016	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_spheroid_RNA_seq]	Expression profiling by high throughput sequencing	Homo sapiens	8	BW TXT	MAZHAR ADLI	Jun 16, 2023
GSE226017	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization	Other Expression profiling by high throughput sequencing	Homo sapiens	27	BW HIC NARROWPEAK TXT	MAZHAR ADLI	Jun 16, 2023
GSE175684	HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	20	BW TAR TSV SRA Run Selector	Stein Aerts	Jun 04, 2021
GSE154741	Autocrine vitamin D signaling switches off pro-inflammatory programs of Th1 cells	Expression profiling by high throughput sequencing Other	Homo sapiens	45	BED BW TXT XLSX SRA Run Selector	Behdad (Ben) Afzali Khoshkbijari	Oct 19, 2021
GSE99722	ZNF827-dependent splicing dynamics are critical for EMT during development and disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	13	BW TXT	Eneritz Agirre	Feb 14, 2023
GSE211202	Co-transcriptional pseudouridylation of mRNAs by the H/ACA complex controls translational efficiency.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	32	BED BW SF	Federico Agostini	Jun 26, 2023