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420 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		GTF
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE37169	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration	Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	7	BW CEL GTF	Douglas Porter	Apr 28, 2012
GSE48307	Orchestrated intron retention regulates normal granulocyte differentiation	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	11	CEL GTF	william ritchie	Jun 27, 2013
GSE62486	T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	143	BED GTF TXT	Richard Jenner	Jun 08, 2016
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE29006	mRNA-seq of Human Airway Epithelial Cells	Expression profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH GTF TXT SRA Run Selector	Avrum Spira	Jun 01, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE33092	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BW GTF SRA Run Selector	Douglas Porter	Apr 28, 2012
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE34448	RNA Subcellular CAGE Localization from ENCODE/RIKEN	Expression profiling by high throughput sequencing	Homo sapiens	78	BED BEDRNAELEMENTS BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Dec 16, 2011
GSE35296	The human pancreatic islet transcriptome: impact of pro-inflammatory cytokines	Expression profiling by high throughput sequencing	Homo sapiens	10	BED GTF SRA Run Selector	Guy Bottu	Mar 09, 2012
GSE35584	RNA-seq from ENCODE/HudsonAlpha	Expression profiling by high throughput sequencing	Homo sapiens	20	BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Apr 27, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38100	Examination of gene expression in wild type and USP49 knockdown cells [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH GTF SRA Run Selector	Hengbin Wang	Jul 28, 2013
GSE38101	USP49 deubiquitinates histone H2B and regulates pre-mRNA splicing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BEDGRAPH GTF	Hengbin Wang	Jul 28, 2013
GSE38993	The transposable element composition of human lincRNAs reveals a role for HERVH elements to promote stem cell specific expression of lincRNAs	Expression profiling by high throughput sequencing	Homo sapiens	4	GTF TXT SRA Run Selector	David R Kelley	Jan 22, 2013
GSE40890	Characteristics of Cross-Hybridization and Cross-Alignment in Pseudo-Xenograft samples by RNA-Seq and Microarrays [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	19	GTF TXT SRA Run Selector	Camilo Valdes	Dec 14, 2012
GSE41279	RNA-seq HL60 cells	Expression profiling by high throughput sequencing	Homo sapiens	2	GTF SRA Run Selector	Touati Benoukraf	Dec 01, 2012
GSE41476	RNA-seq for gastric cancer and normal tissues/cells	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	8	GTF SRA Run Selector	Seongmin Park	Oct 10, 2013