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39 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		RPKM
GSE138698	An engineered IL-2 partial agonist promotes CD8+ T cell stemness	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BED RPKM SRA Run Selector	Peng Li	Jul 06, 2021
GSE130905	An improved method for circular RNA purification that efficiently removes linear RNAs containing G-quadruplexes or structured 3’ ends	Expression profiling by high throughput sequencing	Homo sapiens	10	BEDGRAPH RPKM SRA Run Selector	Jeremy E. Wilusz	Jun 28, 2019
GSE162739	BAP1 activity regulates Polycomb occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	192	BED RPKM TSV TXT SRA Run Selector	Federico Rossi	Jun 27, 2021
GSE68538	CXCR4 regulates extra-medullary myeloma through epithelial-mesenchymal transition-like transcriptional activation	Expression profiling by high throughput sequencing	Homo sapiens	9	RPKM SRA Run Selector	Aldo Roccaro	Oct 31, 2016
GSE59090	ChIP-seq and RNA-seq analysis of PRC2 core subunits in primary human erythroid progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED RPKM WIG	Jian Xu	Jan 01, 2015
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE44267	Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW RPKM TXT SRA Run Selector	Jesse R Dixon	Dec 16, 2013
GSE76491	Coordination of neuron production in mouse and human cerebral cortex by the homolog of Drosophila Mastermind protein	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	37	RPKM SRA Run Selector	Albert E. Ayoub	Sep 09, 2019
GSE229729	Decoding the Universal Human Chromatin Landscape through Teratoma-Based Profiling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BEDGRAPH H5 MTX RPKM TBI TSV	Benjamin L Kidder	Jan 29, 2024
GSE229726	Decoding the Universal Human Chromatin Landscape through Teratoma-Based Profiling [RNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens	3	BEDGRAPH RPKM	Benjamin L Kidder	Jan 29, 2024
GSE23316	ENCODE Caltech RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	36	BED12 BEDGRAPH BOWTIE FASTA PSL RPKM SRA Run Selector	ENCODE DCC	Jul 30, 2010
GSE61476	FOXG1-dependent dysregulation of GABA/glutamate neuron differentiation in autism spectrum disorders	Expression profiling by high throughput sequencing	Homo sapiens	45	RPKM TXT SRA Run Selector	Flora Vaccarino	Jul 16, 2015
GSE50243	FOXO3 selectively amplifies enhancer activity to establish target gene regulation.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	18	BED RPKM SRA Run Selector	Michal Mokry	Nov 26, 2013
GSE67109	Genome-wide RNA-expression analysis after p53 activation in colorectal cancer cells.	Expression profiling by high throughput sequencing	Homo sapiens	2	RPKM SRA Run Selector	Sabine Huenten	Jul 21, 2015
GSE55215	Genomewide analysis of QKI-dependent alternative splicing	Expression profiling by high throughput sequencing	Homo sapiens	4	RPKM SRA Run Selector	Jingyi Hui	Apr 14, 2014
GSE176562	IFNg Regulates NAD+ Metabolism in Human Monocytes	Expression profiling by high throughput sequencing	Homo sapiens	8	RPKM SRA Run Selector	Peng Li	Dec 31, 2021
GSE69842	Illumina Total RNA-seq in HeLa	Expression profiling by high throughput sequencing	Homo sapiens	8	BW RPKM SRA Run Selector	Dubravka Vučićević	Feb 10, 2017
GSE71577	Intrinsic histone acetyltransferase activity of BRD4 is responsible for nucleosome eviction and transcriptional activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	RPKM WIG SRA Run Selector	Dinah S. Singer	May 08, 2016
GSE39229	Mapping Epigenomic Type-Specific Differences Occurring During Hematopoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BED RPKM TXT	Brian J Abraham	Mar 25, 2013