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22916 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		TXT
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE31728	Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by array	Homo sapiens	67	BAM TXT	Matthew Iyer	Aug 29, 2011
GSE32424	Identification of a Novel Angiogenesis and Tumor Suppressor Gene Rab25 in Esophageal Squamous Cell Carcinoma	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM TXT SRA Run Selector	Yunjuan Bao	Dec 05, 2012
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE33782	Transcriptome of normal,paracancerous and cancerous colon tissues based on RNA-seq method	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM TXT SRA Run Selector	qianru ai	Aug 21, 2012
GSE34097	The SEC family of RNA Polymerase II elongation factors: gene target specificity and transcriptional output	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BAM BED TXT SRA Run Selector	Alexander (Garrett) Garruss	May 02, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE39878	RNA-DNA DIFFERENCES IN NASCENT RNA	Expression profiling by high throughput sequencing	Homo sapiens	5	BAM TXT SRA Run Selector	Isabel Xiaorong Wang	Feb 21, 2014
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE63269	Drop-Seq analysis of mixtures of human (HEK) and mouse (3T3) cells (1000/100 STAMPs) at 50 cells per microliter	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	2	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE66693	Drop-Seq analysis of mixtures of human (HEK) and mouse (3T3) cells (1000/100 STAMPs) at 12.5 cells per microliter	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE53554	PAR-CLIP-seq reveals RNAs directly interacting with CTCF in human transformed cell line U2OS	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	3	BB TXT SRA Run Selector	Danny Reinberg	Mar 18, 2014
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE134388	ALKBH5 regulates anti-PD-1 therapy response by modulating lactate and suppressive immune cell accumulation in tumor microenvironment	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	21	BB MTX TSV TXT XLSX SRA Run Selector	Na Li	Aug 10, 2020