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22835 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		TXT
GSE201446	Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single cell resolution [scRNA-seq]	Expression profiling by high throughput sequencing	Ambystoma mexicanum Homo sapiens Mus musculus	615	TXT XLSX	Fang Ye	Jun 17, 2022
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe Xenopus laevis	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE101221	DNA replication-coupled histone modification maintains Polycomb gene silencing in plants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	18	BIGWIG TXT	Danhua Jiang	Aug 20, 2017
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE233555	Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana Drosophila melanogaster Escherichia coli Homo sapiens Mus musculus Saccharomyces cerevisiae	114	CSV TXT	Shintaro Iwasaki	Jul 10, 2024
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE41539	Neonatal and adult cardiomyocytes	Non-coding RNA profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Mus musculus cytomegalovirus 2 Rattus norvegicus human gammaherpesvirus 4	17	TXT	Miguel Mano	Oct 13, 2012
GSE117748	MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance	Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Cytomegalovirus Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human immunodeficiency virus 1 JC polyomavirus Lymphocryptovirus Merkel cell polyomavirus Rhadinovirus	75	CEL TXT	Liam Cornell	Mar 04, 2019
GSE42945	The novel functional effects of exogenous EBV-miR-BARTs on NPC progression	Expression profiling by high throughput sequencing Non-coding RNA profiling by array	Betapolyomavirus macacae Homo sapiens Human gammaherpesvirus 8 Macacine gammaherpesvirus 4 Mus musculus Rattus norvegicus	44	GPR TXT	Xin Li	Jun 30, 2015
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE76967	A broad RNA virus survey reveals dependence on host miRNAs and specific sequestration modulating the cellular transcriptome	Expression profiling by high throughput sequencing Other Third-party reanalysis	Bos taurus Homo sapiens	103	TXT XLSX SRA Run Selector	Troels K H Scheel	Jan 20, 2016
GSE119095	Cartilaginous and osteochondral tissue formation by human mesenchymal stem cells on three-dimensionally woven scaffolds	Expression profiling by high throughput sequencing	Bos taurus Homo sapiens Rattus norvegicus	3	FA GTF TXT SRA Run Selector	Charles Arthur Whittaker	Aug 25, 2020
GSE167580	Comparative 3D Genome Architecture in Vertebrates (RNA-Seq)	Expression profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	29	TXT SRA Run Selector	Mengnan He	Apr 12, 2022
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE98561	Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing	Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	10	CSV RDATA TXT SRA Run Selector	Junyue Cao	Aug 17, 2017
GSE98758	Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	58	BIGWIG BW TSV TXT SRA Run Selector	Scott Allen Lacadie	Aug 29, 2018
GSE102537	Ageing-associated changes in transcription and splicing efficiency influence longevity	Expression profiling by high throughput sequencing	Caenorhabditis elegans Drosophila melanogaster Homo sapiens Mus musculus	82	TXT SRA Run Selector	Antonios Papadakis	Jan 26, 2023
GSE123968	Comprehensive Transcriptome Analysis of Cerebral Cavernous Malformation Across Multiple Species and Genotypes	Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	32	TXT SRA Run Selector	Yan Li	Dec 18, 2018
GSE160304	The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Caenorhabditis elegans Drosophila melanogaster Homo sapiens Mus musculus	101	TXT SRA Run Selector	Charlie Y. Shi	Dec 22, 2020