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241598 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
GSE225623	Fungal plant pathogen “mutagenomics” reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor	Expression profiling by high throughput sequencing	Zymoseptoria tritici IPO323 Triticum aestivum	12	GTF TSV TXT	Daniel Smith	Feb 25, 2023
GSE54874	Transcriptome sequencing at early stage infection of the wheat pathogen Zymoseptoria tritici reveals chromosomal differences in transcription patterns and host specific gene expression.	Expression profiling by high throughput sequencing	Zymoseptoria tritici	3	TXT SRA Run Selector	Ronny Kellner	Jun 30, 2014
GSE58672	Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains	Expression profiling by high throughput sequencing	Zymoseptoria tritici	12	TXT SRA Run Selector	Sabine Fillinger	Jun 10, 2015
GSE106136	Transcriptome analyses of three Zymoseptoria tritici isolates during infection of Triticum aestivum	Expression profiling by high throughput sequencing	Zymoseptoria tritici Triticum aestivum	24	TXT SRA Run Selector	Janine Haueisen	Apr 25, 2018
GSE218898	Improved genome annotation of the fungal wheat pathogen Zymoseptoria tritici IPO323 using Iso-Seq and RNA-Seq data	Expression profiling by high throughput sequencing	Zymoseptoria tritici	38	GFF	Nicolas Lapalu	Jul 04, 2023
GSE222164	Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen	Expression profiling by high throughput sequencing	Zymoseptoria tritici Triticum aestivum	114	FASTA TXT	Daniel Smith	Jan 13, 2023
GSE237842	Transcriptional adaptation facilitates host specialization in a wheat pathogen	Expression profiling by high throughput sequencing	Zymoseptoria pseudotritici Zymoseptoria ardabiliae	4	CSV	Janine Haueisen	Jul 25, 2023
GSE69872	The Epigenomic Landscape of Prokaryotes	Methylation profiling by high throughput sequencing	Zymomonas mobilis subsp. pomaceae ATCC 29192 Xylella fastidiosa Temecula1 Xenorhabdus nematophila ATCC 19061 Xanthobacter sp. 91 Verrucomicrobia bacterium LP2A Veillonella parvula DSM 2008 Treponema succinifaciens DSM 2489 Treponema denticola ATCC 35405 Tolumonas lignilytica Thiomonas sp. FB-6 Thiomicrospira pelophila DSM 1534 Thiobacillus denitrificans ATCC 25259 Thioalkalivibrio sp. ARh3 Thermosipho melanesiensis BI429 Thermoplasma volcanium GSS1 Thermoplasma acidophilum DSM 1728 Thermogemmatispora carboxidivorans Thermobacillus composti KWC4 Thermoanaerobacter sp. X514 Thermanaerovibrio acidaminovorans DSM 6589 Thermacetogenium phaeum DSM 12270 Teredinibacter turnerae Teredinibacter purpureus Syntrophothermus lipocalidus DSM 12680 Syntrophobotulus glycolicus DSM 8271 Sulfurospirillum barnesii SES-3 Sulfurimonas denitrificans DSM 1251 Sulfolobus acidocaldarius DSM 639 Stutzerimonas stutzeri RCH2 Streptosporangium roseum DSM 43021 Streptomyces sp. WMMB 714 Streptococcus equinus Streptobacillus moniliformis DSM 12112 Staphylothermus marinus F1 Staphylococcus epidermidis AG42 Staphylococcus aureus subsp. aureus USA300_TCH1516 Sporocytophaga myxococcoides DSM 11118 Spirochaeta thermophila DSM 6578 Spirochaeta africana DSM 8902 Sphingomonas melonis C3 Sphaerobacter thermophilus DSM 20745 Solitalea canadensis DSM 3403 Solidesulfovibrio cf. magneticus IFRC170 Sinorhizobium medicae WSM1115 Shewanella woodyi ATCC 51908 Selenomonas sp. AB3002 Selenomonas ruminantium AC2024 Sediminispirochaeta smaragdinae DSM 11293 Sediminibacter sp. Hel_I_10 Sedimentitalea nanhaiensis DSM 24252 Sebaldella termitidis ATCC 33386 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Salmonella bongori NCTC 12419 Saccharomonospora viridis DSM 43017 Ruminococcus sp. NK3A76 Ruminococcus sp. HUN007 Ruminococcus flavefaciens AE3010 Ruminococcus albus AD2013 Ruminococcaceae bacterium AE2021 Ruminiclostridium josui JCM 17888 Robinsoniella sp. KNHs210 Rikenella microfusus DSM 15922 Rhodopseudomonas palustris CGA009 Rhizobium etli CIAT 652 Pyrococcus horikoshii OT3 Psychrilyobacter atlanticus DSM 19335 Pseudomonas aeruginosa NCAIM B.001380 Pseudofrankia sp. DC12 Pseudobutyrivibrio ruminis HUN009 Pseudarthrobacter chlorophenolicus A6 Pseudacidobacterium ailaaui Prevotella sp. HUN102 Prevotella sp. 10(H) Pontibacter actiniarum DSM 19842 Polycyclovorans algicola TG408 Polaromonas sp. EUR3 1.2.1 Polaribacter sp. Hel_I_88 Planctopirus limnophila DSM 3776 Phocaeicola salanitronis DSM 18170 Phaeobacter inhibens DSM 17395 Persephonella Peptostreptococcaceae bacterium VA2 Pelobacter seleniigenes DSM 18267 Pedobacter heparinus DSM 2366 Pediococcus acidilactici AGR20 Patulibacter minatonensis DSM 18081 Parabacteroides distasonis ATCC 8503 Palaeococcus ferrophilus DSM 13482 Oxalobacteraceae bacterium AB_14 Orenia marismortui DSM 5156 Oceanicola sp. HL-35 Nocardia sp. BMG51109 Nocardia sp. BMG111209 Nitriliruptor alkaliphilus DSM 45188 Nitratifractor salsuginis DSM 16511 Niabella soli DSM 19437 Neisseria meningitidis FAM18 Neisseria gonorrhoeae FA 1090 Mycoplasmopsis bovis PG45 Microbacterium sp. KROCY2 Methylotenera versatilis 79 Methylotenera sp. 73s Methylorubrum extorquens AM1 Methylophilus sp. 5 Methylophilus sp. 42 Methylophilus sp. 1 Methylophilaceae bacterium 11 Methylohalobius crimeensis 10Ki Methylocystis sp. LW5 Methylobacterium sp. EUR3 AL-11 Methylobacterium sp. 10 Methylobacter tundripaludum 21/22 Methanothermus fervidus DSM 2088 Methanospirillum hungatei JF-1 Methanohalophilus mahii DSM 5219 Methanocorpusculum labreanum Z Methanocaldococcus jannaschii DSM 2661 Meiothermus ruber DSM 1279 Mediterraneibacter gnavus AGR2154 Mastigocladopsis repens PCC 10914 Marinithermus hydrothermalis DSM 14884 Maribacter sp. Hel_I_7 Limisalsivibrio acetivorans Levilactobacillus brevis AG48 Leptolyngbya sp. PCC 6406 Lactococcus lactis subsp. lactis Lactiplantibacillus plantarum Lacrimispora indolis SR3 Lacrimispora indolis DSM 755 Lachnospiraceae bacterium AC2031 Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2012 Lachnoclostridium phytofermentans KNHs2132 Lachnoclostridium phytofermentans KNHs212 Lachnobacterium bovis Klebsiella oxytoca BRL6-2 Klebsiella aerogenes FGI35 Kangiella aquimarina DSM 16071 Kallotenue papyrolyticum Hydrogenovibrio sp. MA2-6 Hydrogenovibrio marinus DSM 11271 Hydrogenovibrio kuenenii DSM 12350 Hydrogenovibrio crunogenus XCL-2 Holophaga foetida DSM 6591 Hirschia baltica ATCC 49814 Hippea sp. KM1 Hippea alviniae EP5-r Haloterrigena turkmenica DSM 5511 Halomicrobium katesii DSM 19301 Gracilinema caldarium DSM 7334 Gillisia sp. JM1 Gillisia limnaea DSM 15749 Geopsychrobacter electrodiphilus DSM 16401 Galbibacter orientalis Flexistipes sinusarabici DSM 4947 Flavobacterium psychrophilum JIP02/86 Flavimarina sp. Hel_I_48 Fervidobacterium nodosum Rt17-B1 Exiguobacterium oxidotolerans JCM 12280 Exiguobacterium chiriqhucha Exiguobacterium aurantiacum DSM 6208 Exiguobacterium antarcticum DSM 14480 Exiguobacterium acetylicum DSM 20416 Eubacterium sp. AB3007 Escherichia coli str. K-12 substr. MG1655 Escherichia coli CFT073 Enterococcus gallinarum Enterococcus faecalis 68A Echinicola vietnamensis DSM 17526 Dyadobacter fermentans DSM 18053 Dinoroseobacter shibae DFL 12 = DSM 16493 Desulfurobacterium sp. TC5-1 Desulfotignum balticum DSM 7044 Desulfospira joergensenii DSM 10085 Desulforegula conservatrix Mb1Pa Desulfohalovibrio reitneri Desulfobacca acetoxidans DSM 11109 Cronobacter Corynebacterium aurimucosum ATCC 700975 Coraliomargarita akajimensis DSM 45221 Cohnella panacarvi Gsoil 349 Clostridium sp. KNHs205 Clostridium sp. ASBs410 Clostridium sp. 12(A) Clostridium perfringens ATCC 13124 Clostridium algidicarnis Clostridioides mangenotii LM2 Clostridioides difficile 630 Chloroflexus aggregans DSM 9485 Cellvibrionaceae bacterium 1162T.S.0a.05 Cellulophaga lytica DSM 7489 Cellulophaga algicola DSM 14237 Cellulomonas sp. KRMCY2 Capnocytophaga ochracea DSM 7271 Calidithermus chliarophilus DSM 9957 Caldithrix abyssi DSM 13497 Caldicoprobacter oshimai DSM 21659 Butyrivibrio sp. FCS014 Butyrivibrio sp. AE3004 Butyrivibrio sp. AE3003 Bryobacter aggregatus MPL3 Bradyrhizobium elkanii USDA 76 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 Bernardetia litoralis DSM 6794 Bacteroides sp. 14(A) Bacillus spizizenii str. W23 Asinibacterium sp. OR53 Arthrobacter sp. 31Y Anoxybacillus flavithermus WK1 Aminobacterium colombiense DSM 12261 Aminiphilus circumscriptus DSM 16581 Alteromonas sp. ALT199 Allomeiothermus silvanus DSM 9946 Alicyclobacillus macrosporangiidus CPP55 Algoriphagus marincola HL-49 Akkermansia muciniphila ATCC BAA-835 Agrobacterium fabrum str. C58 Actinosynnema mirum DSM 43827 Actinobacillus succinogenes 130Z Acidovorax sp. JHL-3 Acidobacteriaceae bacterium TAA 166 Acidobacteriaceae bacterium KBS 146 Acetobacterium woodii DSM 1030 Acetivibrio thermocellus DSM 1313 Acetivibrio thermocellus ATCC 27405 Acetivibrio clariflavus 4-2a	237	CSV GFF SRA Run Selector	Matthew James Blow	Jan 20, 2016
GSE21165	Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	16	TXT	Shihui YANG	Sep 04, 2013
GSE22355	Expression analysis of a respiration-deficient mutant of Zymomonas mobilis	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 Zymomonas mobilis subsp. mobilis ATCC 29191	4	CALLS PAIR TXT	Takeshi Hayashi	Oct 01, 2010
GSE25443	Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	16	TXT	Shihui YANG	May 08, 2014
GSE37848	Transcriptome Profiling of Zymomonas mobilis under furfural stress	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	6	PAIR	Mingxiong He	May 09, 2012
GSE39466	Comparison of gene expression and mutant fitness in Zymomonas mobilis ZM4	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	38	FTR	Morgan N Price	Jul 19, 2012
GSE39558	Transcriptome Profiling of Zymomonas mobilis Under ethanol stress	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 Zymomonas mobilis	6	PAIR	Mingxiong He	Dec 31, 2013
GSE49620	Transcriptional analysis of adaptation to high glucose concentration in Zymomonas mobilis	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	12	PAIR	kun zhang	Oct 14, 2014
GSE51870	High-resolution “tiling” expression data for Zymomonas mobilis ZM4	Expression profiling by genome tiling array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	5	FTR TXT	Morgan N Price	Oct 31, 2013
GSE57773	Discovery of ethanol responsive small RNAs in Zymomonas mobilis	Non-coding RNA profiling by high throughput sequencing	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	2	TXT SRA Run Selector	Seung Hee Cho	May 20, 2014
GSE90043	Phenotypic, genomic and transcriptional analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance	Expression profiling by array	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	6	XLS	Rosa Maria Gutierrez Rios	Nov 19, 2016
GSE125123	Systems-level Analysis of Oxygen Exposure in Zymomonas mobilis: Implications for Isoprenoid Production	Expression profiling by high throughput sequencing	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	38	TXT SRA Run Selector	Daniel Amador-Noguez	Jan 21, 2019
GSE139939	Genome-scale transcription–translation mapping reveals novel features of Zymomonas mobilis promoters and transcription units	Expression profiling by high throughput sequencing Other	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	94	BEDGRAPH TXT SRA Run Selector	Robert Landick	Jul 09, 2020