GEO Data Listings for ENCODE

This page summarizes data submitted to GEO by the ENCODE Data Coordination Center.

Use this page to search and download ENCODE data of interest, and select tracks to view on the NCBI Genome Data Viewer.

Additional data will be added to this page as it becomes available. The last update was January 19, 2023.

The ENCODE Portal is the canonical source for all experimental metadata and data from ENCODE and associated projects.

Please refer to the ENCODE site for more detailed information about the project, including data standards and data use policies.

GEO Accession	Assay type	Target	Sample	Project	Organism	Track Check/Uncheck all tracks	Download
GSM6783765	DNase-seq		CD4-positive, alpha-beta T cell	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783764	DNase-seq		CD4-positive, alpha-beta T cell	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783763	DNase-seq		suppressor macrophage	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783762	DNase-seq		CD4-positive, alpha-beta T cell	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783761	DNase-seq		suppressor macrophage	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783760	DNase-seq		suppressor macrophage	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783759	DNase-seq		suppressor macrophage	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783758	DNase-seq		suppressor macrophage	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783757	DNase-seq		T-helper 17 cell	ENCODE	Homo sapiens	Check track	sra bed,bigbed,bigwig,starch,txt
GSM6783638	long read RNA-seq		K562	ENCODE	Homo sapiens		sra gtf,tsv,txt
GSM6783637	long read RNA-seq		K562	ENCODE	Homo sapiens		sra gtf,tsv,txt
GSM6783636	long read RNA-seq		HepG2	ENCODE	Homo sapiens		sra gtf,tsv,txt
GSM6783635	long read RNA-seq		HepG2	ENCODE	Homo sapiens		sra gtf,tsv,txt
GSM6783628	RNA-seq		K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783627	RNA-seq		K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783626	CRISPR RNA-seq	SKIV2L2	K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783625	CRISPR RNA-seq	SKIV2L2	K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783624	CRISPR RNA-seq	DDX18	K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783623	CRISPR RNA-seq	DDX18	K562	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt
GSM6783622	RNA-seq		A549	ENCODE	Homo sapiens	Check track	sra bigwig,tsv,txt