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GEO Documentation

General information

• Frequently Asked Questions
• Overview of data organization
• MIAME guidelines
• Citing and linking to the GEO database
• Data disclaimer
• Guidelines for reviewers and journal editors
• GEO publications
• Citation listings: deposit and third-party usage

Submission information

• General data submission guide
• Data types
  • Array submissions
    • General
    • Affymetrix
    • Agilent
    • Nimblegen
    • Illumina
  • RT-PCR submissions
  • High-throughput sequence submissions
  • Traditional SAGE submissions
• Submission format options
  • GEOarchive (spreadsheets, e.g., Excel)
  • SOFT (plain text)
  • MINiML (XML)
• GEO File Transfer Protocol (FTP)
• Platform content guidelines
• Updating GEO records or account information

Data download, query and analysis

• Download options
• About GEO DataSets
• About GEO Profiles
• Querying GEO DataSets and GEO Profiles
• Programmatic access
• NCBI-generated RNA-seq count data
• Analyze with GEO2R
• About GEO2R

Featured projects

• ENCODE
• RoadMap Epigenomics (legacy)