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Platform GPL10023 Query DataSets for GPL10023
Status Public on Aug 20, 2010
Title "Dehalococcoides ethenogenes" strain 195 with Mixed Community Sequences
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Dehalococcoides mccartyi 195
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description "Dehalococcoides ethenogenes" strain 195 with additional community members and luciferase. Arrays of this design have barcodes that begin with 16023019 or 2523019. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Mansfeldt CB, Richardson RE, Rowe AR, Hug L, Heavner G
Submission date Feb 10, 2010
Last update date Sep 29, 2012
Contact name Cresten Mansfeldt
E-mail(s) cbm59@cornell.edu
Organization name Cornell University
Street address 220 Hollister Hall
City Ithaca
State/province NY
ZIP/Postal code 14850
Country USA
 
Samples (53) GSM645541, GSM645542, GSM645543, GSM645544, GSM645545, GSM645546 
Series (1)
GSE26287 Meta-Analyses of Dehalococcoides mccartyi Strain 195 Transcriptomic Profiles Identify a Respiration Rate-Related Gene Expression Transition Point and Interoperon Recruitment of a Key Oxidoreductase Subunit
Relations
Alternative to GPL16121

Data table header descriptions
ID
COL Column
ROW Row
NAME Name
ORF Gene
CONTROL_TYPE Control Type
GENOME_ACC GenBank Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
DESCRIPTION Gene Description
SEQUENCE Probe 60 mer Sequence
SPOT_ID spot identifier

Data table
ID COL ROW NAME ORF CONTROL_TYPE GENOME_ACC GENE_SYMBOL GENE_NAME DESCRIPTION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner pos CONTROL
2 96 162 DarkCorner pos CONTROL
3 96 160 DarkCorner pos CONTROL
4 96 158 DET1245 DET1245 FALSE CP000027.1 TfoX domain protein GTATTTGAAGATGAGGTTCTGTTTGTTAAATGGGCAGAACGTTCGGTTATACAGGCCAGG
5 96 156 DET0666 DET0666 FALSE CP000027.1 acetyl-CoA decarbonylase/synthase complex subunit beta( EC:1.2.7.4,EC:2.3.1.169 ) AACTATATACCACCCCTGAAAAAGTGGCCGAGATAAGCGGGCAGTCCAAAAAGATTTATG
6 96 154 DET0152 DET0152 FALSE CP000027.1 hypothetical protein CTTACTCTTAATGAATTTCTGGGGGGCATGCTGGTACTGGCCGGCATATTTATTGTTATG
7 96 152 DET0207 DET0207 FALSE CP000027.1 gmhA phosphoheptose isomerase( EC:5.- ) CCTGCAGCCTGGCTGACAATGTGGCTTTTATCACTTCTCTGGCTAATGATGTTAATTATG
8 96 150 DET0259 DET0259 FALSE CP000027.1 hypothetical protein TTACAATTGCGAATTTCACAAACGGTTTAATCGGGTTTTTCACCCACGCTTTACCGAAAC
9 96 148 DET1365 DET1365 FALSE CP000027.1 gltX glutamyl-tRNA synthetase( EC:6.1.1.17 ) AGTATTTCTGTCTGGAAAAGGTAAGCAAGACTGCCGCCATTTTCAACTATGAAAAGCTGG
10 96 146 DET1627 DET1627 FALSE CP000027.1 ATTACCATCAGCAGTGCCGTTATTACCATGATAATCACCCCTTTTGCCTTAAGTTTCAGC
11 96 144 DET0110 DET0110 FALSE CP000027.1 [Ni/Fe] hydrogenase, group 1, large subunit, putative( EC:1.12.7.2,EC:1.12.99.6 ) GCGCTTATCGGTACTAAGGTACGTGATAATGACAATCCCTTTGAGCTGGTTCGTATTGTC
12 96 142 DET0830 DET0830 FALSE CP000027.1 leuA 2-isopropylmalate synthase( EC:2.3.3.13 ) TTCAAGGCCTTTAAAGATTTGGCCGATAAAAAGAAGGACGTGACTGACCGGGATATAGAA
13 96 140 DET0859 DET0859 FALSE CP000027.1 lepA GTP-binding protein LepA TTCGGTAGTGATTATAACGCCCTCAAAATATATCGGTACGGTTATGGATTTGGTCCGGGA
14 96 138 DET0767 DET0767 FALSE CP000027.1 ATPase, C subunit family protein CTGTTAGGGATGGTACTTTGCGGGCTTTCTCTGGTGCTGGGGTTTATAAAATACATACTG
15 96 136 DET1383 DET1383 FALSE CP000027.1 nadC nicotinate-nucleotide pyrophosphorylase( EC:2.4.2.19 ) TTAGCTTCAAATTCGCTTTTAGAGGTGCTGGTATTCGGCAGGCGGATTATAGAATACAGT
16 96 134 DET0614 DET0614 FALSE CP000027.1 hydrogenase, group 3, VhuG subunit, putative TTAAATGCAGTACTTGCAGGCAAGACATTTGCACTTCCTGAAAGAAGTGTGTGTGATACC
17 96 132 DET1061 DET1061 FALSE CP000027.1 metallo-beta-lactamase family protein TAATAAACCAGACTGTTAAACTGGGCGGGAATATCGTTATTCCCAGTTTCGCTCTGGAAC
18 96 130 DET1545 DET1545 FALSE CP000027.1 reductive dehalogenase, putative TTATCAAAGGCACTGTGGCTAATGTTTCTCTCTTCAACACCTACTTCTACAAGCTGGGTG
19 96 128 DET1276 DET1276 FALSE CP000027.1 fabD malonyl CoA-acyl carrier protein transacylase( EC:2.3.1.39 ) GTGGCAAAAAAGCATAGAAAACATGATTGCTGCCGGGGTAAATACCTTTGTTGAGATTGG
20 96 126 DET0585 DET0585 FALSE CP000027.1 DNA polymerase III, gamma and tau subunits, putative( EC:2.7.7.7 ) ATACAAATACCACAAAGACAAGATTGAAGAACTGGAAAACCGCAAGGTTACCGCCGAAAT

Total number of rows: 15744

Table truncated, full table size 2188 Kbytes.




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