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Platform GPL10076 Query DataSets for GPL10076
Status Public on Jul 13, 2010
Title Children's Hospital Boston Danio rerio 385K Array [071105_Zv7]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Nimblegen
Manufacture protocol see manufacturer's web sitesee manufacturer's web site
 
Description 071105_Zv7_EXPR
 
Submission date Feb 19, 2010
Last update date Sep 06, 2011
Contact name Xiaoying Bai
Organization name Children's Hospital Boston
Street address 1 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (42) GSM512447, GSM512448, GSM512449, GSM512450, GSM512451, GSM512452 
Series (4)
GSE20432 Expression analysis of zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos
GSE117398 Transcriptome Alterations Following Developmental Atrazine Exposure in Zebrafish Are Associated with Disruption of Neuroendocrine and Reproductive System Function, Cell Cycle, and Carcinogenesis
GSE117399 Global Gene Expression Analysis Reveals Dynamic and Developmental Stage–Dependent Enrichment of Lead-Induced Neurological Gene Alterations
Relations
Alternative to GPL14376

Data table header descriptions
ID PROBE_ID
PROBE_DESIGN_ID
CONTAINER
DESIGN_NOTE
SELECTION_CRITERIA
SPOT_ID
Vega_Transcript_ID
Ensembl_Gene_ID
GB_ACC
SEQUENCE PROBE_SEQUENCE
MISMATCH
MATCH_INDEX
FEATURE_ID
ROW_NUM
COL_NUM
PROBE_CLASS
POSITION
DESIGN_ID
X
Y

Data table
ID PROBE_DESIGN_ID CONTAINER DESIGN_NOTE SELECTION_CRITERIA SPOT_ID Vega_Transcript_ID Ensembl_Gene_ID GB_ACC SEQUENCE MISMATCH MATCH_INDEX FEATURE_ID ROW_NUM COL_NUM PROBE_CLASS POSITION DESIGN_ID X Y
ZV700S00005924P000000310 6632_0747_1007 BLOCK1 rank_selected rank:12;score:061;uniq:01;count:111;freq:03;rules:1;tm:75.6 ZV700S00005924 CACTTTTTAGCTACAGCTGAGAGAGAAGTGTTGATGTAACGTAAAATCAGAAGCACTGTT 0 63473209 63473209 1007 747 experimental 310 6632 747 1007
OTTDART00000011906P01296 6632_0749_1007 BLOCK1 rank_selected rank:11;score:254;uniq:00;count:37;freq:01;rules:1;tm:81.1 OTTDART00000011906 ACCTGAGAGCCCCAAGAAGGACATTTTTGACATGAGGCCATTTGAAGATGCCCTGCGCCT 0 63627283 63627283 1007 749 experimental 1296 6632 749 1007
NM_001045333P00656 6632_0751_1007 BLOCK1 rank_selected rank:08;score:279;uniq:05;count:37;freq:01;rules:1;tm:79.7 NM_001045333 GACCGTGTTCGTGCCGTGCACAGGGAAGCTCAATATTATGCTATTGGACCTCTTTTGGAA 0 63582267 63582267 1007 751 experimental 656 6632 751 1007
ZV700S00005298P000000034 6632_0753_1007 BLOCK1 rank_selected rank:02;score:169;uniq:01;count:97;freq:02;rules:1;tm:79.7 ZV700S00005298 AAACACAGATCCTGCCAAAGAGTTAGCACAACAGGTGTCGAAGGTGTTCAGCGCATACAC 0 63465927 63465927 1007 753 experimental 34 6632 753 1007
ENSDART00000059271P00146 6632_0755_1007 BLOCK1 rank_selected rank:04;score:237;uniq:00;count:37;freq:01;rules:1;tm:78.3 ENSDART00000059271 TGACCAAAGAGTGTCAGAAAGACACCACTGAATTCAACACAAGACGCATAACCGTGATCG 0 63506338 63506338 1007 755 experimental 146 6632 755 1007
ENSDART00000065113P00134 6632_0757_1007 BLOCK1 rank_selected rank:07;score:255;uniq:02;count:37;freq:01;rules:1;tm:78.3 ENSDART00000065113 CAGTGGACCTTACCCAACCAGATATGTTGCAAAAGCTGGACAAGTACATGAAACCCATCA 0 63511408 63511408 1007 757 experimental 134 6632 757 1007
OTTDART00000009641P00266 6632_0759_1007 BLOCK1 rank_selected rank:02;score:146;uniq:00;count:113;freq:03;rules:1;tm:79.0 OTTDART00000009641 TTTATGTCTAGCAAGCAACAAACCCATAAGTTCAACCAGCCTGAGGCGTTGGCTGAGTCA 0 63620742 63620742 1007 759 experimental 266 6632 759 1007
OTTDART00000027196P00447 6632_0761_1007 BLOCK1 rank_selected rank:09;score:199;uniq:00;count:37;freq:01;rules:1;tm:79.0 OTTDART00000027196 CATCAAGACCAAAGGAGGAGTATCTGAGATCCTCAACAAACTCTACAGTCGCACTCCAGA 0 63692765 63692765 1007 761 experimental 447 6632 761 1007
ENSDART00000056533P00001 6632_0763_1007 BLOCK1 rank_selected rank:04;score:265;uniq:00;count:37;freq:01;rules:1;tm:83.8 ENSDART00000056533 ATGGCAGTGGTGTTGCGTTCCTCACCTCTCCTGTGGACCCGAGTGGCTGCCATGGTTTTC 0 63503533 63503533 1007 763 experimental 1 6632 763 1007
OTTDART00000006884P00252 6632_0765_1007 BLOCK1 rank_selected rank:04;score:238;uniq:00;count:37;freq:01;rules:1;tm:74.2 OTTDART00000006884 ATGCAAGAATTCCATTAAAGCAGATTGAGAGTTATTATACTACGCATCTTCAGTGCAACA 0 63614274 63614274 1007 765 experimental 252 6632 765 1007
ENSDART00000064697P00008 6632_0006_1008 BLOCK1 rank_selected rank:10;score:116;uniq:00;count:37;freq:02;rules:1;tm:74.9 ENSDART00000064697 TGGAGGCATTGTTAAGAATCACACTCATCTGTGTTTGTGTGCAAGCTAAAGATTATCATA 0 63510991 63510991 1008 6 experimental 8 6632 6 1008
ZV700S00006481P000000425 6632_0008_1008 BLOCK1 rank_selected rank:05;score:079;uniq:00;count:74;freq:02;rules:1;tm:77.0 ZV700S00006481 TAGTCGAGTAAAGCTAAAGATGGCATGCGTTGTCACATTTACACAGTCACCATTTCAACC 0 63479644 63479644 1008 8 experimental 425 6632 8 1008
ZV700S00000391P000000610 6632_0010_1008 BLOCK1 rank_selected rank:07;score:249;uniq:03;count:37;freq:01;rules:1;tm:77.7 ZV700S00000391 ATCATCTCATTACAATGGATAAGATCTACCTTTGACCCAGTGGCTCGGGTCAGTAAGCAA 0 63408836 63408836 1008 10 experimental 610 6632 10 1008
OTTDART00000024786P00992 6632_0012_1008 BLOCK1 rank_selected rank:11;score:226;uniq:00;count:37;freq:01;rules:1;tm:78.3 OTTDART00000024786 ACAGTAAAGACTGGAGAGGAGATCTTTGGCACTATCAGCATGAAGCCCAACGTCAAGAAT 0 63673546 63673546 1008 12 experimental 992 6632 12 1008
OTTDART00000002020P01538 6632_0014_1008 BLOCK1 rank_selected rank:12;score:195;uniq:00;count:37;freq:01;rules:1;tm:71.5 OTTDART00000002020 ATTTTGTAGAATATTACAAAGATTGTGCTCAGATATCAAAATTAGCAAATTCTCTACTGC 0 63603913 63603913 1008 14 experimental 1538 6632 14 1008
ZV700S00000692P000000351 6632_0016_1008 BLOCK1 rank_selected rank:04;score:137;uniq:01;count:74;freq:02;rules:1;tm:79.0 ZV700S00000692 TGGACTTTTCAGGTTCGCTGAAGGCTGTGATTTCAGAGGAACATCTCTGAGGTCATCTCT 0 63412309 63412309 1008 16 experimental 351 6632 16 1008
TC259535P00569 6632_0018_1008 BLOCK1 rank_selected rank:05;score:254;uniq:00;count:37;freq:01;rules:1;tm:81.8 TC259535 GATCTTCAAGTGATGCCTTCCACTCTTGGACTCCTGATGCGATGCGCTGTTCGGTGTGTG 0 63753922 63753922 1008 18 experimental 569 6632 18 1008
ENSDART00000074296P00217 6632_0020_1008 BLOCK1 rank_selected rank:08;score:113;uniq:02;count:78;freq:04;rules:1;tm:79.7 ENSDART00000074296 GCTGCTGGGTCTGATCAGGGTCATTACTTGTGCAAAGGACTCATAGATGGAAGATCAGTC 0 63515658 63515658 1008 20 experimental 217 6632 20 1008
ZV700S00006195P000000417 6632_0022_1008 BLOCK1 rank_selected rank:09;score:114;uniq:00;count:111;freq:03;rules:1;tm:84.5 ZV700S00006195 TGCAGGAGGACGAGCCACAGCTGGAGGTGCTGTACGACAAGATGTACGAGGGGTTCGTGG 0 63476365 63476365 1008 22 experimental 417 6632 22 1008
ENSDART00000089961P00904 6632_0026_1008 BLOCK1 rank_selected rank:09;score:184;uniq:01;count:37;freq:01;rules:1;tm:74.9 ENSDART00000089961 TTTAATGAGGACTCAAGACGACCCATGCAAAACTCTGACATGGAATTACAAAATTGTATC 0 63537030 63537030 1008 26 experimental 904 6632 26 1008

Total number of rows: 385000

Table truncated, full table size 95999 Kbytes.




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Supplementary file Size Download File type/resource
GPL10076_071105_Zv7_EXPR.ndf.gz 23.2 Mb (ftp)(http) NDF
GPL10076_071105_Zv7_EXPR.ngd.gz 1.9 Mb (ftp)(http) NGD

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