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Status
Public on Sep 01, 2010
Title
LFGC miRNA NCODEV1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organisms
Homo sapiens ; Rattus norvegicus Manufacturer
LFGC, Charité, Berlin, Germany
Manufacture protocol
Microarrays was constructed using the NCODETM multi-species microarray probe set V1 (Invitrogen, CA, USA). Oligos were spotted at a concentration of 30µM on epoxy treated slides (Corning®, NY, USA) using the MicroGrid compact microarrayer (Genomic Solutions, Ann Arbor, USA) equipped with a MicroSpot 2500 quill pins. Every oligo was spotted twice. After spotting slides were rinsed in milliQ and dryed.
Support
glass
Coating
other
Web link
http://lfgc.charite.de Contributor(s)
Chernitsa O , Gross A Submission date
Apr 23, 2010
Last update date
Sep 01, 2010
Contact name
Oleg Tchernitsa
E-mail(s)
olegq@hotmail.com Phone
++49 30 450536107
Fax
++49 30 450536909
URL
http://mtp.charite.de Organization name
Charite
Department
Institute of Pathology
Lab
Tumor Pathology
Street address
Chariteplatz 1
City
Berlin
ZIP/Postal code
10117
Country
Germany
Samples (12)
GSM1138462 , GSM1138463 , GSM1138464 , GSM1138465 , GSM1138466 , GSM1138467
Series (2)
GSE46794 A conserved microRNA signature related to cellular transformation by the RAS oncogene (miRNA)
GSE46806 A conserved microRNA signature related to cellular transformation by the RAS oncogene
Data table header descriptions ID miRBase_ID mirBase micro RNA accession
SEQUENCE sequence of the spotted oligonucleotide
miRNA_ID common miRNA name
Data table ID miRBase_ID SEQUENCE miRNA_ID hsa-let-7a
MIMAT0000062 AACTATACAACCTACTACCTCAAACTATACAACCTACTACCTCA
hsa-let-7a
hsa-let-7b
MIMAT0000063 AACCACACAACCTACTACCTCAAACCACACAACCTACTACCTCA
hsa-let-7b
hsa-let-7c
MIMAT0000064 AACCATACAACCTACTACCTCAAACCATACAACCTACTACCTCA
hsa-let-7c
hsa-let-7d
MIMAT0000065 ACTATGCAACCTACTACCTCTACTATGCAACCTACTACCTCT
hsa-let-7d
hsa-let-7e
MIMAT0000066 ACTATACAACCTCCTACCTCAACTATACAACCTCCTACCTCA
hsa-let-7e
hsa-let-7f
MIMAT0000067 AACTATACAATCTACTACCTCAAACTATACAATCTACTACCTCA
hsa-let-7f
hsa-let-7g
MIMAT0000414 ACTGTACAAACTACTACCTCAACTGTACAAACTACTACCTCA
hsa-let-7g
hsa-let-7i
MIMAT0000415 ACAGCACAAACTACTACCTCAACAGCACAAACTACTACCTCA
hsa-let-7i
hsa-miR-1
MIMAT0000416 TACATACTTCTTTACATTCCATACATACTTCTTTACATTCCA
hsa-miR-1
hsa-miR-100
MIMAT0000098 CACAAGTTCGGATCTACGGGTCACAAGTTCGGATCTACGGGT
hsa-miR-100
hsa-miR-101a
MIMAT0000099 CTTCAGTTATCACAGTACTGTACTTCAGTTATCACAGTACTGTA
hsa-miR-101a
hsa-miR-103
MIMAT0000101 TCATAGCCCTGTACAATGCTGTCATAGCCCTGTACAATGCTG
hsa-miR-103
hsa-miR-105
MIMAT0000102 ACAGGAGTCTGAGCATTTGAACAGGAGTCTGAGCATTTGA
hsa-miR-105
hsa-miR-106a
MIMAT0000103 CTACCTGCACTGTAAGCACTTTCTACCTGCACTGTAAGCACTTT
hsa-miR-106a
hsa-miR-106b
MIMAT0000680 ATCTGCACTGTCAGCACTTTAATCTGCACTGTCAGCACTTTA
hsa-miR-106b
hsa-miR-107
MIMAT0000104 TGATAGCCCTGTACAATGCTGTGATAGCCCTGTACAATGCTG
hsa-miR-107
hsa-miR-10a
MIMAT0000253 CACAAATTCGGATCTACAGGGTCACAAATTCGGATCTACAGGGT
hsa-miR-10a
hsa-miR-10b
MIMAT0000254 ACAAATTCGGTTCTACAGGGTAACAAATTCGGTTCTACAGGGTA
hsa-miR-10b
hsa-miR-122a
MIMAT0000421 ACAAACACCATTGTCACACTCCACAAACACCATTGTCACACTCC
hsa-miR-122a
hsa-miR-124a
MIMAT0000422 TGGCATTCACCGCGTGCCTTAATGGCATTCACCGCGTGCCTTAA
hsa-miR-124a
525 41 Kbytes .Supplementary data files not provided
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