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Status
Public on Sep 21, 2010
Title
NimbleGen Arabidopsis thaliana 4x72K Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Arabidopsis thaliana Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Catalog number
A4511001-00-01
Description
Gene Expression array
Submission date
Jul 15, 2010
Last update date
Jan 02, 2015
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (42)
GSM566754 , GSM566755 , GSM566756 , GSM566757 , GSM566758 , GSM566759
GSM913936 ,
GSM913937 ,
GSM913938 ,
GSM913939 ,
GSM913940 ,
GSM913941 ,
GSM913942 ,
GSM913943 ,
GSM913944 ,
GSM913945 ,
GSM913946 ,
GSM913947 ,
GSM951608 ,
GSM951609 ,
GSM951610 ,
GSM951611 ,
GSM951612 ,
GSM951613 ,
GSM951614 ,
GSM951615 ,
GSM957168 ,
GSM957169 ,
GSM957170 ,
GSM957171 ,
GSM1009615 ,
GSM1009616 ,
GSM1009617 ,
GSM1009618 ,
GSM1009619 ,
GSM1009620 ,
GSM1009621 ,
GSM1009622 ,
GSM1569072 ,
GSM1569073 ,
GSM1569074 ,
GSM1569075 Series (8)
GSE22957 Genome-wide expression analysis in kyp and cmt3 mutants of Arabidopsis thaliana
GSE23030 Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
GSE37217 Expression analysis of picloram responsive genes preceding cell elongation in Arabidopsis hypocotyls.
GSE38898 Carbon Redistribution from Surface Lipids into Triacylglycerols in Leaves of Arabidopsis by Introducing a Chlamydomonas Diacylglycerol Acyltransferase 2
GSE39158 Expression analysis of TRANSPOSABLE ELEMENT KILLER (TEK) knockdown lines
GSE41165 Expression analysis of uninfected Boechera stricta and infected Boechera stricta with Puccinia monoica forming pseudoflowers using an Arabidopsis thaliana gene expression 4x72K array design from NimbleGen.
GSE64355 Reactive leaf volatiles act as powerful inducers of abiotic stress-related gene expression [NimbleGen]
GSE64356 Reactive leaf volatiles act as powerful inducers of abiotic stress-related gene expression
Data table header descriptions ID Based on SEQ_ID from .ngd file
GB_ACC GenBank Accession number
ORF Locus tag
CHROMOSOME START STOP DESCRIPTION Transcript description
SPOT_ID
Data table ID GB_ACC ORF CHROMOSOME START STOP DESCRIPTION SPOT_ID AT1G01010.1
NM_099983 AT1G01010 chr1
3631
5899
ExemplarFor AT1G01010; gene_id 839580; transcript_id AT1G01010; gene_name ANAC001; alt T25K16.1
AT1G01020.1
NM_099984 AT1G01020 chr1
6790
8737
ExemplarFor AT1G01020; gene_id 839569; transcript_id AT1G01020; gene_name ARV1; alt T25K16.2
AT1G01030.1
NM_099985 AT1G01030 chr1
11649
13611
ExemplarFor AT1G01030; gene_id 839321; transcript_id AT1G01030; gene_name AT1G01030; alt T25K16.3
AT1G01040.1
NM_099986 AT1G01040 chr1
23146
31164
ExemplarFor AT1G01040; gene_id 839574; transcript_id AT1G01040; gene_name DCL1; alt ABNORMAL SUSPENSOR 1
AT1G01050.1
NM_099987 AT1G01050 chr1
31181
33148
ExemplarFor AT1G01050; gene_id 839579; transcript_id AT1G01050; gene_name AT1G01050; alt T25K16.5
AT1G01060.1
NM_099988 AT1G01060 chr1
33379
37840
ExemplarFor AT1G01060; gene_id 839341; transcript_id AT1G01060; gene_name LHY; alt LATE ELONGATED HYPOCOTYL
AT1G01070.2
NM_099989 AT1G01070 chr1
38753
40944
ExemplarFor AT1G01070; gene_id 839550; transcript_id AT1G01070; gene_name AT1G01070; alt T25K16.7
AT1G01080.1
NM_099990 AT1G01080 chr1
45296
47019
ExemplarFor AT1G01080; gene_id 839463; transcript_id AT1G01080; gene_name AT1G01080; alt T25K16.19
AT1G01090.1
NM_099991 AT1G01090 chr1
47485
49279
ExemplarFor AT1G01090; gene_id 839429; transcript_id AT1G01090; gene_name PDH-E1 ALPHA; alt PYRUVATE DEHYDROGENASE E1 ALPHA
AT1G01100.1
NM_099992 AT1G01100 chr1
50091
51182
ExemplarFor AT1G01100; gene_id 839410; transcript_id AT1G01100; gene_name AT1G01100; alt T25K16.9
AT1G01110.1
NM_099993 AT1G01110 chr1
52869
54685
ExemplarFor AT1G01110; gene_id 839394; transcript_id AT1G01110; gene_name AT1G01110; alt T25K16.10
AT1G01120.1
NM_099994 AT1G01120 chr1
57269
59167
ExemplarFor AT1G01120; gene_id 839395; transcript_id AT1G01120; gene_name KCS1; alt T25K16.11
AT1G01130.1
NM_099995 AT1G01130 chr1
61963
63811
ExemplarFor AT1G01130; gene_id 839359; transcript_id AT1G01130; gene_name AT1G01130; alt F6F3.33; unknown protein
AT1G01140.2
NM_099996 AT1G01140 chr1
64167
67625
ExemplarFor AT1G01140; gene_id 839349; transcript_id AT1G01140; gene_name CIPK9; alt CBL-INTERACTING PROTEIN KINASE 9
AT1G01150.1
NM_099997 AT1G01150 chr1
70115
71998
ExemplarFor AT1G01150; gene_id 839294; transcript_id AT1G01150; gene_name AT1G01150; alt F6F3.30; unknown protein
AT1G01160.1
NM_099998 AT1G01160 chr1
72357
74096
ExemplarFor AT1G01160; gene_id 839278; transcript_id AT1G01160; gene_name GIF2; alt F6F3.29
AT1G01170.1
NM_099999 AT1G01170 chr1
73824
74731
ExemplarFor AT1G01170; gene_id 839263; transcript_id AT1G01170; gene_name AT1G01170; alt F6F3.32; unknown protein
AT1G01180.1
NM_100000 AT1G01180 chr1
75633
77446
ExemplarFor AT1G01180; gene_id 839239; transcript_id AT1G01180; gene_name AT1G01180; alt F6F3.5; unknown protein
AT1G01190.1
NM_100001 AT1G01190 chr1
83045
84864
ExemplarFor AT1G01190; gene_id 839233; transcript_id AT1G01190; gene_name CYP78A8; alt F6F3.25; CYP78A8; heme binding / iron ion binding / monooxygenase/ oxygen binding
AT1G01200.1
NM_100002 AT1G01200 chr1
86516
88213
ExemplarFor AT1G01200; gene_id 839493; transcript_id AT1G01200; gene_name AT1G01200; alt F6F3.1
30361 5077 Kbytes .Supplementary file Size Download File type/resource GPL10689_ATH6_60mer_expr.ndf.gz
4.3 Mb
(ftp) (http) NDF
GPL10689_ATH6_60mer_expr.ngd.gz
1.4 Mb
(ftp) (http) NGD
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