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Status
Public on Sep 01, 2010
Title
Agilent Human 244K Alternative Splicing Oligo Custom Microarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
60-mer ink-jet Agilent microarray
Description
A microarray platform to profile alternative splicing levels for 5782 cassette-type alternative exons.
Contributor(s)
Tripathi V , Ellis JD , Shen Z , Song DY , Pan Q , Watt AT , Freier SM , Frank Bennett C , Sharma A , Bubulya PA , Blencowe BJ , Prasanth SG , Prasanth KV Submission date
Jul 15, 2010
Last update date
Sep 01, 2010
Contact name
Qun Pan
E-mail(s)
qun.pan@utoronto.ca Organization name
University of Toronto
Street address
160 College St.
City
Toronto
ZIP/Postal code
M5S 3E1
Country
Canada
Samples (12)
GSM566846 , GSM566847 , GSM622144 , GSM622145 , GSM622156 , GSM622157
Series (5)
GSE22963 The Nuclear-retained non-coding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
GSE25287 Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation (expression)
GSE25495 Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
GSE30992 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
GSE31948 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [AS microarray]
Data table header descriptions ID SEQUENCE Probe sequence
GB_ACC GenBank Accession number
UNIGENE UniGene cluster ID
Data table ID SEQUENCE GB_ACC UNIGENE BBY1.1
TTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGTTTTTTTTTTTT
AF067516 BBY1.2
AACAACGCTTCTTCGGTGAAGTTCTTTTGTACTTCCAAATGTCGCTTTTTTTTTTTT
AF067516 BBY1.3
TCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGGTTTTTTTTTTTT
AF067516 BBY1.4
GCAGAGATAAAACGCTTAAAAAATAACAACGCTTCTTCGGTGATTTTTTTTTTTT
AF067516 BBY1.5
TGTACTTCCAAATGTCGCAGTCTGATGACCGGGATTCCATTTTTTTTTTTT
AF067516 BBY1.6
GCAGAGATAAAACGCTTAAAAAATTCTGATGACCGGGATTCCATTTTTTTTTTTT
AF067516 BBY2.1
ATATACAAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGATTTTTTTTTTTT
AK023123 BBY2.2
AGAAGAAACCTCAAGTGTATTGACACGTAAAGAAGCAGCAGTCCTTTTTTTTTTTTT
AK023123 BBY2.3
CAGGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTTTTTTTTTT
AK023123 BBY2.4
TGGAAGAGCTGATGGAAGAGGTTTATTAACAAAACTAGGATACCCATTTTTTTTTTTT
AK023123 BBY2.5
CAGAGAACGATGATGATTTAATGGTTCAAACCTTGTACTACTCAGCTTTTTTTTTTTT
AK023123 BBY2.6
TGGAAGAGCTGATGGAAGAGGTTCAAACCTTGTACTACTCAGCTTTTTTTTTTTT
AK023123 BBY3.1
TATTACTGCTCATGTCATTGCACTGGTTCATCTTCCTTCTCAACTTACTTTTTTTTTTTT
BC000573 BBY3.2
GTAACATGGGAGTGTTTGATCCAACAGAAATACACAATCGAGGGCAGTTTTTTTTTTTT
BC000573 BBY3.3
CTGGAGAAGCCGTGGTTGAAGTCAGCCTACACTACAGTTTTTTTTTTTTT
BC000573 BBY3.4
GTTGCCACTTGGAATATATATCGATACATTATGGTGCCGAGTGGTTTTTTTTTTTT
BC000573 BBY3.5
CTGCTTCTTCATGTATCTTTATAGTATGATCTTAGCTTTGATAAATGACTTTTTTTTTTT
BC000573 BBY3.6
GTTGCCACTTGGAATATATATCGTATGATCTTAGCTTTGATAAATGACTTTTTTTTTTTT
BC000573 BBY4.1
CTAACATTGAACTTAGAGAGAAATTCATCCTACCAGAGGGAGCATCCTTTTTTTTTTTT
BC007330 BBY4.2
ACTTCACTTCAGTTCTCTCGCTGTTATGACAAACCCTGGTTGGTTTTTTTTTTTT
BC007330
34692 2442 Kbytes .Supplementary data files not provided
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