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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 28, 2010 |
| Title |
021764 Agilent Human Genotypic Designed CGH 105k Microarray |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
Refer to www.chem.agilent.com
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| Web link |
http://www.genotypic.co.in/micro_arrays.html?mnu=2
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| Contributor(s) |
Mugasimangalam RC, Shukla RN, Sinha S |
| Submission date |
Jul 23, 2010 |
| Last update date |
Aug 11, 2016 |
| Contact name |
madavan vasudevan |
| E-mail(s) |
madavan.vasudevan@gmail.com
|
| Phone |
+91-9845093355
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| Organization name |
Theomics International Private Limited
|
| Street address |
Kasturi Nagar
|
| City |
Bangalore |
| State/province |
Karnataka |
| ZIP/Postal code |
560043 |
| Country |
India |
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| Samples (40)
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GSM587481, GSM587482, GSM587483, GSM587484, GSM587485, GSM587486
GSM587487, GSM587488, GSM587489, GSM587490, GSM587491, GSM587492, GSM587493, GSM587494, GSM587495, GSM587496, GSM587497, GSM587498, GSM587499, GSM587500, GSM587501, GSM587502, GSM587503, GSM587504, GSM587505, GSM587506, GSM587507, GSM587508, GSM587509, GSM587510, GSM587511, GSM587512, GSM587513, GSM587514, GSM587515, GSM587516, GSM587517, GSM587518, GSM587519, GSM587520
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| Series (1) |
| GSE23831 |
Array CGH analysis of Oral Squamous Cell Carcinoma |
|
| Relations |
| Alternative to |
GPL22311 (Probe name version) |
| Data table header descriptions |
| ID |
|
| PROBE_ID |
|
| CONTROL_TYPE |
Hybridization Control |
| GB_ACC |
GenBank Accession number |
| GENE_SYMBOL |
Gene Symbol |
| GENE_NAME |
Gene Name |
| ACCESSION_STRING |
Genbank Accession String |
| CHROMOSOMAL_LOCATION |
Chromosomal Location |
| CYTOBAND |
|
| DESCRIPTION |
Protein Description |
| SEQUENCE |
Probe Sequence |
| SPOT_ID |
|
| Data table |
| ID |
PROBE_ID |
CONTROL_TYPE |
GB_ACC |
GENE_SYMBOL |
GENE_NAME |
ACCESSION_STRING |
CHROMOSOMAL_LOCATION |
CYTOBAND |
DESCRIPTION |
SEQUENCE |
SPOT_ID |
| 1 |
HsCGHBrightCorner |
pos |
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|
|
|
|
|
--HsCGHBrightCorner |
| 2 |
DarkCorner |
pos |
|
|
|
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--DarkCorner |
| 3 |
DarkCorner |
pos |
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--DarkCorner |
| 4 |
A_16_P41401808 |
FALSE |
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chr21:19756286-19756345 |
hs|q21.1 |
|
AGAGTCAAATTGCACTTGATGAACACATAACCAAATACAGATCTGGACTATATTCCCTCA |
|
| 5 |
A_14_P129683 |
FALSE |
NM_001145819 |
SOX6 |
SRY (sex determining region Y)-box 6 |
ref|NM_001145819|ref|NM_017508|ref|NM_001145811|ref|NM_033326 |
chr11:16032139-16032198 |
hs|p15.2 |
Homo sapiens SRY (sex determining region Y)-box 6 (SOX6), transcript variant 4, mRNA. |
TAGAATATGGTCAAGTCAAATTACCCAGAGAGATCTCTAAGAATTTGCATGTGGTCAAGT |
|
| 6 |
A_14_P132273 |
FALSE |
NM_006348 |
COG5 |
component of oligomeric golgi complex 5 |
ref|NM_006348|ref|NM_181733|ref|NM_001161520 |
chr7:106789985-106790044 |
hs|q22.3 |
Homo sapiens component of oligomeric golgi complex 5 (COG5), transcript variant 1, mRNA. |
TTACCTGTCCACAAACAGCATAAATATGATCCATAAGTTTCTCCATATTGGTCCAGAATG |
|
| 7 |
A_16_P03402155 |
FALSE |
|
|
|
|
chr18:70055529-70055588 |
hs|q22.3 |
|
CATTGAAACACCCATTAGTATCTTCCACCTTTAAAACAAAAATGAAATGAAGAGCCACCA |
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| 8 |
A_16_P00016431 |
FALSE |
|
|
|
ens|ENST00000376178 |
chr1:13065132-13065179 |
hs|p36.21 |
|
GCCTCTGAATGATCCAAGTTTCCCCAGAGCAGAAGAAGGAGATTGTTA |
|
| 9 |
A_14_P136155 |
FALSE |
|
|
|
|
chr12:47147923-47147970 |
hs|q13.11 |
|
CTATTTTAGATGATATCATGGCAGCAGAGGGGTGCCTCTCCTCTGTAG |
|
| 10 |
A_14_P120144 |
FALSE |
NM_001080512 |
BICC1 |
bicaudal C homolog 1 (Drosophila) |
ref|NM_001080512 |
chr10:59944705-59944764 |
hs|q21.1 |
Homo sapiens bicaudal C homolog 1 (Drosophila) (BICC1), mRNA. |
CTTTCAGTTTTCTACATTAGTTTGGAGTGATATGAAAGAATGATCTGTTTCACCTGCGCA |
|
| 11 |
A_14_P107591 |
FALSE |
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chr1:90966090-90966149 |
hs|p22.2 |
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GCCTTCATCAGTGTTTGGGATGTAAAGAACCCTGTCTATTTAAAAGAGATACTGCATTTT |
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| 12 |
A_16_P19009295 |
FALSE |
AK309777 |
|
|
gb|AK309777|gb|AK311174 |
chr10:88960512-88960571 |
hs|q23.2 |
Homo sapiens cDNA, FLJ99818. |
AAATAAGTCCAAGTATTATTGTGTTTATGTGTATAAACCTGTGCACACACACAAACGCGT |
|
| 13 |
A_14_P131677 |
FALSE |
NM_004621 |
TRPC6 |
transient receptor potential cation channel, subfamily C, member 6 |
ref|NM_004621 |
chr11:100858863-100858922 |
hs|q22.1 |
Homo sapiens transient receptor potential cation channel, subfamily C, member 6 (TRPC6), mRNA. |
AAAACATGACAGAAAATCAGTCTTTACCTATTACCCAGGATATAATGAGCATCTCCATCC |
|
| 14 |
A_16_P01572054 |
FALSE |
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chr6:122580710-122580769 |
hs|q22.31 |
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AGTGAACCCATATCTGGAATACACAGTTCATTATCAGTCATTACGTATACCACGAACTTC |
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| 15 |
A_14_P110940 |
FALSE |
AF126782 |
|
|
gb|AF126782 |
chr14:59706215-59706273 |
hs|q23.1 |
Homo sapiens retinal short-chain dehydrogenase/reductase retSDR4 mRNA, complete cds. |
TCCCTGTCTAATGTCTATTCTCTTTGCCTTGCCCTTACTTTTGTTCAGATCAACTTTAG |
|
| 16 |
A_14_P113357 |
FALSE |
NM_152763 |
C1orf62 |
chromosome 1 open reading frame 62 |
ref|NM_152763 |
chr1:109201183-109201241 |
hs|p13.3 |
Homo sapiens chromosome 1 open reading frame 62 (C1orf62), mRNA. |
ACTCAGAATCCAACAGAACCTTTCTGTAGAATCCAAATTGATTTTCTGAAGTCAGGTGA |
|
| 17 |
A_16_P35346355 |
FALSE |
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|
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|
chr1:165757185-165757244 |
hs|q24.2 |
|
TGGTCCATACTTACATTGTCTTATATTCACTCTTGCCACATTGATCATCGAATCACCATT |
|
| 18 |
A_16_P00476466 |
FALSE |
NM_001080427 |
THSD7B |
thrombospondin, type I, domain containing 7B |
ref|NM_001080427 |
chr2:137621657-137621716 |
hs|q22.1 |
Homo sapiens thrombospondin, type I, domain containing 7B (THSD7B), mRNA. |
TGTGGATTTCTCCTTGCTATCATTATTACAGATTTCCGTTCAGATACTTTTAGGTCAGGG |
|
| 19 |
A_16_P16114132 |
FALSE |
NM_001099952 |
ITPR1 |
inositol 1,4,5-triphosphate receptor, type 1 |
ref|NM_001099952|ref|NM_002222 |
chr3:4820118-4820177 |
hs|p26.2 |
Homo sapiens inositol 1,4,5-triphosphate receptor, type 1 (ITPR1), transcript variant 1, mRNA. |
GAAGTCATGCAAAGATTTAGTTTTTCAGGGTGAAAATGCATTTACATCGTTGACCTACTG |
|
| 20 |
A_16_P00157557 |
FALSE |
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chr1:119346355-119346414 |
hs|p12 |
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ACTGACTCACCACCTAATCTTGCACAAGTCTCTTAATTACAGAAACCACATTCCTATTTT |
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Total number of rows: 105072
Table truncated, full table size 22351 Kbytes.
| Supplementary data files not provided |
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