GEO help: Mouse over screen elements for information.
Status
Public on Mar 25, 2011
Title
CATMA Arabidopsis 30K V3 TAIR V9 spotted cDNA array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
Warwick HRI, University of Warwick
Manufacture protocol
Arabidopsis GST products were produced by PCR as part of the CATMA Project (see Catma website www.catma.org. These were spotted using a Biorobotics TASII instrument using 24 pins split pins with a 26 by 26 grid pattern for each pin. Slides used were aminosilane treated Corning UltraGapII slides. Slides were checked for quality post spotting through staining each slide was bar coded and tracked individually.
Submission date
Aug 19, 2010
Last update date
Mar 25, 2011
Contact name
Jonathan David Moore
E-mail(s)
jonathan.moore@tgac.ac.uk Organization name
The Genome Analysis Centre
Department
Platforms and Pipelines
Street address
Norwich Research Park
City
Norwich
ZIP/Postal code
NR4 7UH
Country
United Kingdom
Samples (302)
GSM585271 , GSM585272 , GSM585273 , GSM585274 , GSM585275 , GSM585276
GSM585277 ,
GSM585278 ,
GSM585279 ,
GSM585280 ,
GSM585281 ,
GSM585282 ,
GSM585283 ,
GSM585284 ,
GSM585285 ,
GSM585286 ,
GSM585287 ,
GSM585288 ,
GSM585289 ,
GSM585290 ,
GSM585291 ,
GSM585292 ,
GSM734540 ,
GSM734541 ,
GSM734542 ,
GSM734543 ,
GSM734544 ,
GSM734545 ,
GSM734546 ,
GSM734547 ,
GSM734548 ,
GSM734549 ,
GSM734550 ,
GSM734551 ,
GSM734552 ,
GSM734553 ,
GSM734554 ,
GSM734555 ,
GSM734556 ,
GSM734557 ,
GSM734558 ,
GSM734559 ,
GSM734560 ,
GSM734561 ,
GSM734562 ,
GSM734563 ,
GSM734564 ,
GSM734565 ,
GSM734566 ,
GSM734567 ,
GSM734568 ,
GSM734569 ,
GSM734570 ,
GSM734571 ,
GSM734572 ,
GSM734573 ,
GSM734574 ,
GSM734575 ,
GSM734576 ,
GSM734577 ,
GSM734578 ,
GSM734579 ,
GSM734580 ,
GSM734581 ,
GSM734582 ,
GSM734583 ,
GSM734584 ,
GSM734585 ,
GSM734586 ,
GSM734587 ,
GSM1354976 ,
GSM1354977 ,
GSM1354978 ,
GSM1354979 ,
GSM1354980 ,
GSM1354981 ,
GSM1354982 ,
GSM1354983 ,
GSM1354984 ,
GSM1354985 ,
GSM1354986 ,
GSM1354987 ,
GSM1354988 ,
GSM1354989 ,
GSM1354990 ,
GSM1354991 ,
GSM1354992 ,
GSM1354993 ,
GSM1354994 ,
GSM1354995 ,
GSM1354996 ,
GSM1354997 ,
GSM1354998 ,
GSM1354999 ,
GSM1355000 ,
GSM1355001 ,
GSM1355002 ,
GSM1355003 ,
GSM1355004 ,
GSM1355005 ,
GSM1355006 ,
GSM1355007 ,
GSM1355008 ,
GSM1355009 ,
GSM1355010 ,
GSM1355011 ,
GSM1355012 ,
GSM1355013 ,
GSM1355014 ,
GSM1355015 ,
GSM1355016 ,
GSM1355017 ,
GSM1355018 ,
GSM1355019 ,
GSM1355020 ,
GSM1355021 ,
GSM1355022 ,
GSM1355023 ,
GSM1355024 ,
GSM1355025 ,
GSM1355026 ,
GSM1355027 ,
GSM1355028 ,
GSM1355029 ,
GSM1355030 ,
GSM1355031 ,
GSM1355032 ,
GSM1355033 ,
GSM1355034 ,
GSM1355035 ,
GSM1355036 ,
GSM1355037 ,
GSM1355038 ,
GSM1355039 ,
GSM1355040 ,
GSM1355041 ,
GSM1355042 ,
GSM1355043 ,
GSM1355044 ,
GSM1355045 ,
GSM1355046 ,
GSM1355047 ,
GSM1355048 ,
GSM1355049 ,
GSM1355050 ,
GSM1355051 ,
GSM1355052 ,
GSM1355053 ,
GSM1355054 ,
GSM1355055 ,
GSM1355056 ,
GSM1355057 ,
GSM1355058 ,
GSM1355059 ,
GSM1355060 ,
GSM1355061 ,
GSM1355062 ,
GSM1355063 ,
GSM1355064 ,
GSM1355065 ,
GSM1355066 ,
GSM1355067 ,
GSM1355068 ,
GSM1355069 ,
GSM1355070 ,
GSM1355071 ,
GSM1355072 ,
GSM1355073 ,
GSM1355074 ,
GSM1355075 ,
GSM1355076 ,
GSM1355077 ,
GSM1355078 ,
GSM1355079 ,
GSM1355080 ,
GSM1355081 ,
GSM1355082 ,
GSM1355083 ,
GSM1355084 ,
GSM1355085 ,
GSM1355086 ,
GSM1355087 ,
GSM1355088 ,
GSM1355089 ,
GSM1355090 ,
GSM1355091 ,
GSM1355092 ,
GSM1355093 ,
GSM1355094 ,
GSM1355095 ,
GSM1355096 ,
GSM1355097 ,
GSM1355098 ,
GSM1355099 ,
GSM1355100 ,
GSM1355101 ,
GSM1355102 ,
GSM1355103 ,
GSM1355104 ,
GSM1355105 ,
GSM1355106 ,
GSM1355107 ,
GSM1355108 ,
GSM1355109 ,
GSM1355110 ,
GSM1355111 ,
GSM1355112 ,
GSM1355113 ,
GSM1355114 ,
GSM1355115 ,
GSM1355116 ,
GSM1355117 ,
GSM1355118 ,
GSM1355119 ,
GSM1355120 ,
GSM1355121 ,
GSM1355122 ,
GSM1355123 ,
GSM1355124 ,
GSM1355125 ,
GSM1355126 ,
GSM1355127 ,
GSM1355128 ,
GSM1355129 ,
GSM1355130 ,
GSM1355131 ,
GSM4556271 ,
GSM4556272 ,
GSM4556273 ,
GSM4556274 ,
GSM4556275 ,
GSM4556276 ,
GSM4556277 ,
GSM4556278 ,
GSM4556279 ,
GSM4556280 ,
GSM4556281 ,
GSM4556282 ,
GSM4556283 ,
GSM4556284 ,
GSM4556285 ,
GSM4556286 ,
GSM4556287 ,
GSM4556288 ,
GSM4556289 ,
GSM4556290 ,
GSM4556291 ,
GSM4556292 ,
GSM4556293 ,
GSM4556294 ,
GSM4556295 ,
GSM4556296 ,
GSM4556297 ,
GSM4556298 ,
GSM4556299 ,
GSM4556300 ,
GSM4556301 ,
GSM4556302 ,
GSM4556303 ,
GSM4556304 ,
GSM4556305 ,
GSM4556306 ,
GSM4556307 ,
GSM4556308 ,
GSM4556309 ,
GSM4556310 ,
GSM4556311 ,
GSM4556312 ,
GSM4556313 ,
GSM4556314 ,
GSM4556315 ,
GSM4556316 ,
GSM4556317 ,
GSM4556318 ,
GSM4556319 ,
GSM4556320 ,
GSM4556321 ,
GSM4556322 ,
GSM4556323 ,
GSM4556324 ,
GSM4556325 ,
GSM4556326 ,
GSM4556327 ,
GSM4556328 ,
GSM4556329 ,
GSM4556330 ,
GSM4556331 ,
GSM4556332 ,
GSM4556333 ,
GSM4556334 ,
GSM4556335 ,
GSM4556336 ,
GSM4556337 ,
GSM4556338 ,
GSM4556339 ,
GSM4556340 ,
GSM4556341 ,
GSM4556342 ,
GSM4556343 ,
GSM4556344 ,
GSM4556345 ,
GSM4556346 Series (5)
GSE22982 High resolution temporal profiling of gene expression during Arabidopsis leaf development (senescence process)
GSE29642 Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis (time series)
GSE39598 Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis
GSE56094 Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv. tomato DC3000.
GSE150678 Gene expression time series during natural senescence of Arabidopsis thaliana leaves under short-day growth conditions
Data table header descriptions ID Chrom TAIR9 pseudochromosome containing best BLAST alignment to probe sequence
TAIR9_best TAIR9 gene model whose mRNA sequence contains best BLAST alignment to probe sequence
TAIR9_others Other TAIR9 gene models with alignments to probe sequence
SEQUENCE Probe sequece
ORF SPOT_ID
Data table ID Chrom TAIR9_best TAIR9_others SEQUENCE ORF SPOT_ID CATMA1a00010
1
AT1G01010
TCAACCAATCACGTCAACGAAATTCAGGATCTTACAACACTTACTCTGAGTATGATTCAGCAAATCATGGCCAGCAGTTTAATGAAAACTCTAACATTATGCAGCAGCAACCACTTCAAGGATCATTCAACCCTCTCCTTGAGTATGATTTTGCAAATCACGGCGGTCAGTGGCTGAGTGACTATATCGACCTGCAACAGCAAGTTCCTTACTTGGCACCTTATGAAAATGAGTCGGAGATGATTTGGAAGCATGTGATTGAAGAA
AT1G01010 CATMA1a00020
1
AT1G01020
AT1G05400
GTGGTGGTACCCTCCTTGGAATGGTGGGCATATGTGGAACCCTCCTATGAATGTTGGAGATATGTGGGACTCTCCTATGAATGTGGGGCATCAACACATTGTTGCAACACCAAGTGAATGTCATAGGAAAGACGAGGAGACGGTTGAAGCCGAAGTTGAGGCTCCCCTTGATTCTTATCCGGAGAATGCTACTACCATGGCGAGAAAGCAAC
AT1G01020 CATMA1a00030
1
AT1G01030
CCAAACTTTACATAGATTGGAGGCATAGACCCGACATGAGCCTCGTTCAAGCACATCAGTTTGGTAATTTTGGTTTCAATTTCAATTTCCCGACCACTTCTCAATATTCCAACAGATTTCATCCATTGCCAGAATATAACTCCGTCCCGATTCACCGGGGCTTAAACATCGGAAATCACCAACGTTCCTATTATAACACCCAGCGTCAAGAGTTCGTAG
AT1G01030 CATMA1a00035
1
AT1G01040
GGCTCATGCAAAGAGATTTACGTTTGGGGTAAGAGTTAATACGAGCGATAGAGGATGGACCGATGAGTGTATTGGCGAGCCAATGCCGAGTGTTAAGAAAGCTAAGGATTCAGCTGCGGTTCTTCTACTTGAGCTTTTAAATAAAACTTTTTCTTGATTCTTTTACTCTCTTCAACGAGATGTAGTCATTACATTTTAAACCTTAAAACCATAGTGGTTG
AT1G01040 CATMA1a00040
1
AT1G01050
AGCTTCTCCTCAGAAGATTTCTGCAGCATCTATGTTTCTGTTACTTTTCATTGATAATAAGAAGCATATGATCCTAATTGATATTACTTTTATCTCTGCATTTTTCTTCCTTATCATTTGGTCCTTCTGTAATTTCGTTTTAAAGACCCT
AT1G01050 CATMA1a00045
1
AT1G01060
TCCTAATTTCAAAAGCCAGGATTCTTGTGCTGCAGACCAAGAAGGAGTAGTAATGATCGGTGTTGGAACATGCAAGAGTCTTAAAACGAGACAGACAGGATTTAAGCCATACAAGAGATGTTCAATGGAAGTGAAAGAGAGCCAAGTTGGGAACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAGCTTCTACATGACAGACTTGGAGGTAAAAAAAAAACATCCACATTTTTATCAATATCTTTAAATCTAGTGTTAGTAGTTTGCTTCTCCAATCTTTATGAAAGAGACTTTTAATTTTCCTTCCGAACATTTCTTTGGTCATGTCAGGTTCTGTACCATATTACCCCATGTCTTGTCTCTTGTCTCTGTTTG
AT1G01060 CATMA1a00050
1
AT1G01070
TGTCTTCAGGAATGGATAACGAAGCTCAATATACTACTCCTAATAAGGATAACGACTCTAAGTCGCCCGTTTAATTTAATTATATTGTTGTTAATGTATGTTTCAAATAACTGTTATGTCCTAGTTAATGTTTAAGGAGAGGTAATGAGAGATAAAATTTTATAATTCCAAACATCAACGTAGAGAT
AT1G01070 CATMA1a00060
1
AT1G01080
AAGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACAAGAAGAAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAACACAAGGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACCACTTTAGCAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAGAAACAGAGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAATGGAACAGT
AT1G01080 CATMA1a00070
1
AT1G01090
GCTCTTCGGCAAGGTTACTGGATGCTGCAGAGGCCAAGGTGGATCCATGCACATGTTCTCCAAAGAACACAACATGCTTGGTGGCTTTGCTTTTATTGGTGAAGGCATTCCTGTCGCCACTGGTGCTGCCTTTAGCTCCAAGTACAGGAGGGAAGTCTTGAAACAGGATTGTGATGATGTCACTGTCGCCTTTTTCGGAGATGGAACTTGTAACAACGGACAGTTCTTCGAGTGTCTCAACATGGCTGCTCTCTATAAACTGCCTATTATCTTTGTTGTCGAGAATAACTTGTGGGCCATTGGGATGTCTCACTTGAGAGCCACTTCTGACCCCGAGATTTGGAAGAAAGGTCCTGCATTTGGGATGCCTGGTGTTCATGTTGACGGTATGGATGTCTTG
AT1G01090 CATMA1a00080
1
AT1G01100
AT5G47700
ACTAAACGCAGTCACTTGTCTTTCTTCTTTGTAGTTGGATATTGGAGACTATATTTTGTCGTATGAGTTATTATTACTTGTTTGATCTGGCTAAAGGACTATTAGTTGGTTTATGATGCGTATGTTGTATAACTCAAGTTTCCTAGCAAACCAATCGGCTCGGGCTTTTGTTA
AT1G01100 CATMA1a00090
1
AT1G01110
TCCACCAGCACCTCAGGAAGATTCACTTAACGTAAACTCAAAACCCTCTCCGGAGACAGCACCGAGTTACGCAACTACGACGCCGCCATCCAACGCCGGTAAACCCCCGTCCGCCGTAGTCCCCATCGCCACGTCAGCATCTAAGACACTCGCACC
AT1G01110 CATMA1a00100
1
AT1G01110
TCTCTCCAGCTTCTACTAGTGACTTTAGGAATTGGCTTAGATGATTGGTGGTGATGCCAAATCAACTGTCAAGATCTTTCATCATCCTCCAGGAAAAGAACGTTTTAAAATTTTATATTCCAGAAGAAAACAAACACTTTTATATTGTGTCGTTGAGGTTGAGTTGTGTTTGGAAGATAAG
AT1G01110 CATMA1a00110
1
AT1G01120
GTCAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGTCGTTCGAACACATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGACGAGAGAGGAACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGCTCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTTCCATTGTCAGAGCAGTTGATGTTCTTGATTTCCTTGGTCA
AT1G01120 CATMA1a00130
1
AT1G01140
AGGACGCGAGTAGGGAATTACGAGATGGGACGAACTCTCGGAGAAGGAAGCTTCGCTAAGGTGAAATACGCCAAGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTTCCGTCACAAAATGGTCGAACA
AT1G01140 CATMA1a00140
1
AT1G01150
TGAAGATCCTGCAACCTTTTACTGTCCCTATTGTTGGTTTAAGGAGCAAGCTACTAGATCCACGGCTTTGAGAACAAGGGGTGTTGCAGCTGCGAAGACCCTTGTTCAATATGGATGTAGTGAGCTGAGGAGTGGAGATATAGTCATGACGAGAGAAAACAGTCAAC
AT1G01150 CATMA1a00150
1
AT1G01160
AT1G01170
TGATATTTAGGACTTGTGAGTCTCGTAAGGGCTTTTTGCAATAGCTTGTTTGAGTTTTTTAACAGAAGATAGACTGTGGAGTAGTTCCGCAAACCGTGTTGTAATGTATTGTTATTTAGTACAAGCTCGGATTTAGAAAACATCGTCATCG
AT1G01160 CATMA1a00160
1
AT1G01170
AT1G01160
ATGAATCCCATTAGCCGTCAGAATTTCATCGTCAAGACTCGTCCGGAATGAGAAAATAATAAGTTCAATGCTTTGATTTTCAGAATAAGATGAACGATGACGATGTTTTCTAAATCCGAGCTTGTACTAAATAACAATACATTACAACACGGTTTGCGGA
AT1G01170 CATMA1a00170
1
AT1G01180
CGATACACATGGCGAATCTCACGCGCCGACTTGGGCTCGAGGAGACTCAGATTCTATGCGTCGACGACTTCCGTGGCTGGCCCGGTTTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTCTGCTTATGTACCAGTTTATGCAAAACGTGGTTATCTCGGATTTTTCCGGTTCGATATTGCCGGTTCCTTTCTCGACCGGTTCGGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGACGGCGGACCTGGTGGAGATAGACGCGGGTCACGATTTTAATTCGGCATGGGCGGATATAAACCGGGCGGTTCGGATACTCCGACCCGGCGGTGTTATATTTGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTGAGGAGAGCCGTGAA
AT1G01180 CATMA1a00180
1
AT1G01190
AAATGATATTTAGGGGAACGGACACTGTTGCGGTTTTGGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATCCCAAAGTTCAATTAACGGTCCACGATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTGGATGAGTCAGACCTTCCATCACTCAC
AT1G01190 CATMA1a00190
1
AT1G01200
TCCGTTTACTCGAGGAGATTTTCAGCCGCGTTGTTGTTTCGAGAAAAGCTATGGAATCCGACGGTGGAGCCACCGTGAAACTTGACGGTTCGAGAATTGATGTCATCTCTGGTTCGGATCTTGAGACTAGTAATATCAAGGAACAAGCTTCGTGCTC
AT1G01200
30336 8082 Kbytes .Supplementary data files not provided
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