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Platform GPL11218 Query DataSets for GPL11218
Status Public on Nov 18, 2010
Title "Dehalococcoides ethenogenes" strain 195 with Methanogens and Fosmids, Base Composition Method
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Dehalococcoides mccartyi 195
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description "Dehalococcoides ethenogenes" strain 195 with additional community members and luciferase. Arrays of this design have barcodes that begin with 16021465 or 2521465. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Mansfeldt C, Richardson RE, Rowe A, Hug L, Heavner G
Submission date Nov 16, 2010
Last update date Nov 18, 2010
Contact name Cresten Mansfeldt
E-mail(s) cbm59@cornell.edu
Organization name Cornell University
Street address 220 Hollister Hall
City Ithaca
State/province NY
ZIP/Postal code 14850
Country USA
 
Samples (6) GSM626961, GSM626962, GSM626963, GSM626964, GSM626965, GSM626966
Series (1)
GSE25499 Dehalococcoides ethenogenes strain 195 in mixed culture continuous (PSS) PCE and TCE fed versus batch PCE fed

Data table header descriptions
ID
COL Column on Microarray
ROW Row on Microarray
NAME Name of probe
ORF Gene
CONTROL_TYPE False indicates sample, Positive (pos) and Negative (neg)
GB_ACC Accession Number
GENE_SYMBOL The abbreviated symbol for the gene for the probe
GENE_NAME The name of the gene for the probe
CHROMOSOMAL_LOCATION If it is mapped to a specific spot (left unmapped for all porbes)
DESCRIPTION Any additional information about the sequence
SEQUENCE The probe sequence itself
SPOT_ID

Data table
ID COL ROW NAME ORF CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner pos Positive Control --GE_BrightCorner
2 96 162 DarkCorner pos Positive Control --DarkCorner
3 96 160 DarkCorner pos Positive Control --DarkCorner
4 96 158 DET1206 DET1206 FALSE CP000027.1 metM homoserine dehydrogenase( EC:1.1.1.3 ) unmapped DET195 Genome Sequence Probe GTGGAGCTGGGCGGGCTGGATAAAGTAAAGGATATAAATAATTTTGTTCGGGTAGGTATT
5 96 156 DET1045 DET1045 FALSE CP000027.1 ssb single-strand binding protein unmapped DET195 Genome Sequence Probe ATAGCGTCAAGCATTACCGTACTGAGGTAATTGCTTCACGGGTTACCTTCCTTGAGAAAG
6 96 154 DET0277 DET0277 FALSE CP000027.1 hypothetical protein unmapped DET195 Genome Sequence Probe GGTTAACCGGATTACTAAAGAAAATCAGGGTTATTCCGAGACGGCGAGGATATTGAGCGA
7 96 152 DET0485 DET0485 FALSE CP000027.1 rplX ribosomal protein L24 unmapped DET195 Genome Sequence Probe GAACTGGCGGACGGTAAAAGTGTACGCTACTGCAAATCCTGCAATGAGGTAATTGACTAA
8 96 150 DET0185 DET0185 FALSE CP000027.1 formate dehydrogenase accessory protein FdhE, putative unmapped DET195 Genome Sequence Probe ATGCGCCTACTGCACTAATGCTAACACTGAAAAACTCCGCCACTTTTACTCTGCTGTATT
9 96 148 DET0227 DET0227 FALSE CP000027.1 hypothetical protein unmapped DET195 Genome Sequence Probe ATACACCAGGCTGCGAATAAGCTGTTGGTTAAAGGGCAGTTTTGTAAATGATGGGGAAGG
10 96 146 DET1152 DET1152 FALSE CP000027.1 nitrogenase molybdenum-iron protein, beta subunit, putative unmapped DET195 Genome Sequence Probe AGATTTTGCGGATATTGAAACCCTGGCAACTGAACTTAAGCCGGATATCTTTATCGGCAG
11 96 144 DET0442 DET0442 FALSE CP000027.1 ruvA Holliday junction DNA helicase RuvA unmapped DET195 Genome Sequence Probe ACCGGCATGCCTCTGGAAGAACGGATAAAACTGGCGCTTAACTATTTCAACAATAAGTGA
12 96 142 DET0611 DET0611 FALSE CP000027.1 hypothetical protein unmapped DET195 Genome Sequence Probe CGGGCCGAAATATTTTGCCCGGAATATATGCCTGGTGCTTGAGAAGCAAACTTTAAAAAA
13 96 140 DET1540 DET1540 FALSE CP000027.1 DNA-binding response regulator unmapped DET195 Genome Sequence Probe GATTCCTATGCCCCGAAATATATTATGAATATGCATGGGGTTGGTTATTTTCTATCCAAG
14 96 138 DET1591 DET1591 FALSE CP000027.1 methyltransferase, UbiE/COQ5 family( EC:2.1.1.- ) unmapped DET195 Genome Sequence Probe TTGAAATTCTTAACCGCCGCCAGCGTCTTTTAGGTATGTTCCAGATAATTCAGGTGCGCA
15 96 136 DET1459 DET1459 FALSE CP000027.1 ribosomal subunit interface protein, putative unmapped DET195 Genome Sequence Probe TAGAAGAAGCGGTCAACCAGATGAACCTATCAGGTGAAGAATACCTGCTCTTTTTAGGCC
16 96 134 DET0350 DET0350 FALSE CP000027.1 rpsU ribosomal protein S21 unmapped DET195 Genome Sequence Probe TTTGAGAGTATGCTCAAACGCTTTAACCGCAAGGTACAGCAGGACGGCATTCTTTCTGAA
17 96 132 DET0937 DET0937 FALSE CP000027.1 thioesterase family protein unmapped DET195 Genome Sequence Probe ATTTTTGGCGGAATCACCATGTCTTTGGCAGATGAGGCATTCGGTTATGCAGTGAACAGT
18 96 130 DET0381 DET0381 FALSE CP000027.1 iron-sulfur cluster-binding protein, Rieske family unmapped DET195 Genome Sequence Probe AGGATAATAACCTTTATGCTTATGAAAATGCCTGCCCCCATGGCGGACGCAAAATTGACC
19 96 128 DET0668 DET0668 FALSE CP000027.1 folD-1 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase( EC:3.5.4.9 ) unmapped DET195 Genome Sequence Probe GTGTAGGTCCTATGACTATTATTATGCTTATGCTAAATACCCTGACCGCCGCCAAAAGGG
20 96 126 DET1070 DET1070 FALSE CP000027.1 endolysin, putative unmapped DET195 Genome Sequence Probe AATCCAACGCTCATCAAAAACGTAAACCTGATCCTGACCGGCTGGAAGATTAGAGTGAAA

Total number of rows: 15744

Table truncated, full table size 2717 Kbytes.




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