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Platform GPL11305 Query DataSets for GPL11305
Status Public on Dec 10, 2010
Title Agilent Technologies Custom microarray (SurePrint G3 Custom CGH, 8 Å~ 60 K)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Submission date Dec 10, 2010
Last update date Dec 10, 2010
Contact name Kornelia Polyak
E-mail(s) kornelia_polyak@dfci.harvard.edu
Phone 617-632-2106
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Lab Polyak
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Samples (4) GSM638125, GSM638126, GSM638127, GSM638128
Series (2)
GSE25292 Altered antisense-to-sense transcript ratios in breast cancer
GSE26000 Altered antisense-to-sense transcript ratios in breast cancer: Agilent

Data table header descriptions
ID
ProbeName Agilent probe name
SEQUENCE oligo sequence
CHROMOSOMAL_LOCATION Chromosomal Location (hg18)
ORF Gene Symbol
Strand Strand for the corresponding gene (S: sense, AS: antisense)
SPOT_ID
SPOT_ID

Data table
ID ProbeName SEQUENCE CHROMOSOMAL_LOCATION ORF Strand SPOT_ID SPOT_ID
1 HsCGHBrightCorner HsCGHBrightCorner
2 DarkCorner DarkCorner
3 DarkCorner DarkCorner
4 CUST_9934_PI422596046 CTTAAAGGAACCAAGCATGTGACTTTTTATTTGTATTCTGGTTGATTTGTCTTGTCCAAG chr11:119864940-119864999 ARHGEF12 AS
5 CUST_3284_PI422805152 TTAAGACCCTGTTAGTGTAAAAGGTGGCAGCGTCATTCATCTCCTTGACATAAGGACCAG CAP2 S
6 CUST_1571_PI422805152 CATTGGGATAAGTATTTCCATCAGTCCCACAGACAGGGTCATATATCTTGGTGCATCCAT SPINK1 S
7 CUST_779_PI422596055 GGGTAAAAGTGGTTAACGTACTGTTGGATCAACAAATAAAGGTTACAGTTTTGTAAGAGA chr10:98270421-98270480 TM9SF3 AS
8 CUST_242_PI422805152 ATAAAACTGGAAGTACTGCACGGCAGAAGACTCCTCCGTCCGCTCGCTGAACACAGACCG CARM1 S
9 CUST_11357_PI422596046 TTATCTTTAAACTTGCCTTTGGGTTGTTACTTGTATGTGGTTCATGCCAATTCTAGGGGG chr14:50281411-50281470 NIN AS
10 CUST_9664_PI422596070 CTCATCCAGAAGGACGTTGGAACTCTTGATGTCTCCATGGATGAGGCTGGGGCTGTCCTG IRAK1 S
11 CUST_2748_PI422805134 AACAGTTAAGTAGAGGGAACTTTCCGTACTCTTCAAAGCTCGAGGTTACCAGGAGAAGTG chr7:89883849-89883908 CLDN12 AS
12 CUST_7956_PI422596070 ATGGCCATTATCTTCAGCTGACTTTTGGCTTTACTTTCTTGTCAGGTGTCAGGGATGCCT chr3:133856009-133856068 UBA5 S
13 CUST_11547_PI422596070 TCAGAGTTGTAACTCTAGTAAAATTTTCAGTCTGGCCCCCTCCCAATCTTTCCAGGACAG chr1:154312745-154312804 MEX3A S
14 CUST_11901_PI422596070 GAAAAATAAATAACATGCAGGAGCAGCCGCGTCAGTCTCCAATTTCCCGAGATTGCTGTA chr12:2814395-2814454 NRIP2 S
15 CUST_7183_PI422805134 GTTCTCAGTACATAAGTGCATTTTGAAAGAGGTTCCAGCTATCACTTGTAACCATATATA chr20:62058699-62058758 UCKL1, ZNF512B AS
16 CUST_948_PI422805134 TAACTTTAGTGATCTGAGTTCTTGAGATCATTTACTCTGTCTGACCTCAGCCTTGCTTCC chr2:119846590-119846649 DBI AS
17 CUST_1219_PI422553082 GGTGGTTATTAGGGCTTTTTCTGAAATGTGTATCTATGTAACATCACTTAAGTGTGCTTA chr17:2532245-2532304 PAFAH1B1 AS
18 CUST_1486_PI422553082 AATGCAGGCCCCAAGGATGAGGACCAGGACTACATCGTGGACCACTCCATTGCCATCTAC chr22:49309020-49309079 SCO2 AS
19 CUST_6028_PI422805152 AGATTAGAGCGGGAGTCACGACCCCTGTACCCATAAACCCAGTCAAGGCTGAGGGTCTCT EML3 S
20 CUST_4822_PI422805134 CAGCATGAACATGTCAACTGCTTGATTCTCAACTATACACAAACAAACATCATAGAAATC chr13:49003206-49003265 RCBTB1 AS

Total number of rows: 62976

Table truncated, full table size 6944 Kbytes.




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