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Platform GPL11399 Query DataSets for GPL11399
Status Public on Jan 13, 2011
Title JCVI PFGRC Haemophilus influenzae 22K v3 array designed primarily based on strain RD_KW20
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Haemophilus influenzae
Manufacturer JCVI PFGRC
Manufacture protocol 3QHI, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 4574 oligonucleotides, has 22176 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jan 07, 2011
Last update date Jan 13, 2011
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain 86-028NP Target map of strain 86-028NP
Strain biotype_aegyptius_F3031 Target map of strain biotype_aegyptius_F3031
Strain pF3028 Target map of strain pF3028
Strain pF3031 Target map of strain pF3031
Strain RD_KW20 Target map of strain RD_KW20
Strain R2846 Target map of strain R2846
Strain R2866 Target map of strain R2866
Strain HK1212 Target map of strain HK1212
ORF
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain 86-028NP Strain biotype_aegyptius_F3031 Strain pF3028 Strain pF3031 Strain RD_KW20 Strain R2846 Strain R2866 Strain HK1212 ORF SPOT_ID
3QHI00001_A_1 TAGGGGAAGGAGCGAGTAAAGTAGAGTTACAACAGCTTCGTACTGAACACGATAGCTTGAAAGTGCAAAT 42.86 30 79 RD_KW20 HI1717 hypothetical protein HI1717::70::100.0::4.7E-11::+ HI1717
3QHI00001_A_10 TAGGAATGGGAAGAGATCACACCTTATTCGCAACCGCAGATGGTAAAGTTAAATTTGAAGTAAAAGGCGA 40.0 29 79 RD_KW20 HI0879 ribosomal protein L27 rpL27 NTHI1042::70::98.57143::4.6E-11::+ HI0879::70::100.0::1.8E-11::+ Hflu103000270::70::98.57143::4.6E-11::+ Hflu203000360::70::100.0::1.8E-11::+ HI0879
3QHI00001_A_11 CTTCCGTAAAGAAAATGTGTCGTAACTGTAAGATTGTTAAACGTGAGGGTGTTGTACGCGTATTGTGTAG 40.0 31 76 RD_KW20 HI0798.1 ribosomal protein L36 rpL36 HI0798.1::70::100.0::4.1E-11::+ HI0798.1
3QHI00001_A_12 ATACCGTAGAGATTCGCGAATGTCGCCCTCTATCAAAAACCAAATCTTGGACTTTAGTTCGTGTTGTTGA 41.43 30 79 RD_KW20 HI0786 ribosomal protein S17 rpS17 NTHI0948::70::100.0::1.8E-11::+ HI0786::70::100.0::1.8E-11::+ Hflu103000379::70::100.0::1.8E-11::+ Hflu203000252::70::100.0::1.8E-11::+ HI0786
3QHI00001_A_13 CACCTTTAAACAAAGTGCCACTAAAGCGGAATTGATTGCGTTATTTGCTCCCGCCGATGGTGAAAAAAGT 42.86 30 90 RD_KW20 HI1507 hypothetical protein HI1507::70::100.0::4.0E-11::+ HI1507
3QHI00001_A_14 CATTTTCATGAATTAACGGATGACAAAAAAGATATCTTTATTCGTTTATTAGCAAGTACGGATTTGCAGT 30.0 31 130 RD_KW20 HI0627 conserved hypothetical protein NTHI0720::69::92.753624::3.3E-9::+ HI0627::70::100.0::1.8E-11::+ Hflu103001652::70::97.14286::1.1E-10::+ Hflu203000009::70::98.57143::4.6E-11::+ HI0627
3QHI00001_A_15 GCAACGTTTCTATAAATTGTTCTATCACATTGATTTAACCAATGAACAAGCACTTAAGTTGTTTCAAGTA 30.0 31 117 RD_KW20 HI1269 hypothetical protein HI1269::70::100.0::4.0E-11::+ HI1269
3QHI00001_A_16 TTTCGTCGCAATTATATTGTTGATGTCTATCGGATTTATTATCAAAAAACAAAGTTTAAAAGGCAGCTGC 31.43 30 82 RD_KW20 HI0173 hypothetical protein NTHI0261::70::98.57143::4.5E-11::+ HI0173::70::100.0::1.8E-11::+ Hflu103001425::70::98.57143::4.5E-11::+ Hflu203001446::70::100.0::1.8E-11::+ HI0173
3QHI00001_A_17 AGGCTATATAGTTTGGGGTATATTAATCGGAAAGAAAGGAAAACTAGAAGAAATGTGTATTGACTTTGTT 31.43 32 72 RD_KW20 HI0114 hypothetical protein HI0114::70::100.0::4.0E-11::+ HI0114
3QHI00001_A_18 AAACCCATTCTTTTTTATGCAGAAACATGCCCAGATACCGCGCCATTTGTCGCGGAGTTGGATCGCTTAG 47.14 30 84 RD_KW20 HI0926 hypothetical protein NTHI1097::70::100.0::1.8E-11::+ HI0926::70::100.0::1.8E-11::+ Hflu103000216::70::100.0::1.8E-11::+ Hflu203000406::70::100.0::1.8E-11::+ HI0926
3QHI00001_A_19 AAGTGCGAGCACATCTGATTTTAAGAAATTCGCAATCAATCATTTAGATATATTGCCACGCCAAGCAGGT 38.57 30 95 RD_KW20 HI1404 hypothetical protein HI1404::70::100.0::3.9E-11::+ ORF01762::70::97.14286::5.2E-11::+,ORF00401::70::97.14286::1.6E-10::+ HI1404
3QHI00001_A_2 TTTTAGTACTGGTGAAATTCACGCTCTAACCATCAAAACTTATACCGTAGAAAAATGGAAACGCGATCGT 37.14 29 73 RD_KW20 HI1082 conserved hypothetical protein NTHI1245::70::98.57143::4.6E-11::+ HI1082::70::100.0::1.8E-11::+ Hflu103000079::70::98.57143::4.6E-11::+ Hflu203000555::70::98.57143::4.6E-11::+ HI1082
3QHI00001_A_20 CTGCCACCAAAGGTGTGGCAAATGCCCTTTCACAACGGAGAGAACAAGGAAAAGAGCAAGGGAGAGAGCA 51.43 31 69 RD_KW20 HI1495 hypothetical protein HI1495::70::100.0::1.8E-11::+ HI1495
3QHI00001_A_21 ATCCGTTGCACATTTTGTAACAAATTATTGGCGAAAGTAGGTACAGTTGGTTATTTAGAAATCAAATGCC 34.29 31 95 RD_KW20 HI1522.1 hypothetical protein orf43::70::95.71428::6.4E-10::+ HI1522.1::70::100.0::3.9E-11::+ HI1522.1
3QHI00001_A_22 AAAAACACACGGATTATTAAAAGGTGGTTGGCTTACGCTGAAACGTGTATTAAAATGCCATCCTTTAAAC 35.71 31 97 RD_KW20 HI1000 conserved hypothetical protein NTHI1174::70::100.0::1.8E-11::+ HI1000::70::100.0::1.8E-11::+ Hflu103000141::70::100.0::2.3E-11::+ Hflu203000480::70::100.0::1.8E-11::+ HI1000
3QHI00001_A_23 CGTGGGTTATTATCCAACCAGTAATTTCATTCACGTAGATACAGGCCCTGTGAGAACTTGGAAAGGCGTG 45.71 27 102 RD_KW20 HI1665 hypothetical protein NTHI1967::70::97.14286::5.4E-11::+ HI1665::70::100.0::3.8E-11::+ Hflu103001450::70::100.0::8.3E-12::+ Hflu203001107::70::100.0::8.3E-12::+ HI1665
3QHI00001_A_24 CGATGAGATTTATGTGATCGATCCTATACTTTGCACGGAATGTGTCGGCCATTACGACACCCCAACCTGC 48.57 30 88 RD_KW20 HI0527 ferredoxin fdx-2 NTHI0653::70::100.0::1.8E-11::+ HI0527::70::100.0::1.8E-11::+ Hflu103000730::70::94.28571::7.5E-10::+ Hflu203001814::70::97.14286::1.2E-10::+ HI0527
3QHI00001_A_3 ATTCTAGCAATATCTTCACAACAGATAAAGCAGCAAATGAATTTAGTTTTCCTGATCTGAAAAACTTCCG 32.86 29 103 RD_KW20 HI0967 hypothetical protein HI0967::70::100.0::4.4E-11::+ HI0967
3QHI00001_A_4 CCTATCGGCTTTCCCCTCTGGTTTGAACTCTCTTGTATTTATTTGCCTATTCTGTTTATTGTAATTGGTC 38.57 31 41 RD_KW20 HI0974.1 conserved hypothetical protein HI0974.1::70::100.0::1.8E-11::+ Hflu203000455::70::92.85714::1.9E-9::+ HI0974.1
3QHI00001_A_5 ACCAGATGGAAGAATGAGTAAAGAAAAAGAAAACTTCTTTCGCTATCGTAATCAATTGATCGTTTTAAAT 30.0 30 89 RD_KW20 HI0870 hypothetical protein HI0870::70::100.0::4.4E-11::+ HI0870

Total number of rows: 5074

Table truncated, full table size 1279 Kbytes.




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