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Platform GPL13314 Query DataSets for GPL13314
Status Public on Mar 22, 2011
Title Illumina HumanOmni2.5-Quad BeadChip
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
Description common and rare SNP content from the 1kGP (MAF>2.5%) for diverse world populations
build: hg18
=optimized tag SNP content from recently released 1000 Genomes Project pilot data
 
Submission date Mar 22, 2011
Last update date Sep 27, 2012
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (126) GSM696169, GSM696170, GSM696171, GSM696172, GSM696173, GSM696174 
Series (6)
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
GSE28101 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)
GSE31645 Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer

Data table header descriptions
ID
Chr
MapInfo
SNP_ID NCBI SNP accession
SPOT_ID

Data table
ID Chr MapInfo SNP_ID SPOT_ID
GA008510 Y 11771305 GA008510
GA008524 Y 19612089 GA008524
GA008529 Y 19613392 GA008529
GA008532 Y 26872641 GA008532
GA026677 Y 2782814 GA026677
GA026703 Y 11784571 GA026703
GA026708 Y 13562690 GA026708
GA026710 Y 19611912 GA026710
GA026711 Y 19611913 GA026711
GA026714 Y 19612997 GA026714
GA026716 Y 19613711 GA026716
GA026719 Y 21150966 GA026719
MitoA10045G MT 10045 MitoA10045G
MitoA10551G MT 10551 MitoA10551G
MitoA11252G MT 11252 MitoA11252G
MitoA11468G MT 11468 MitoA11468G
MitoA12309G MT 12309 MitoA12309G
MitoA13106G MT 13106 MitoA13106G
MitoA13264G MT 13264 MitoA13264G
MitoA13781G MT 13781 MitoA13781G

Total number of rows: 2450000

Table truncated, full table size 94034 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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